View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_43 (Length: 227)
Name: NF1449_low_43
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 3533394 - 3533577
Alignment:
| Q |
31 |
acctatttgtcttttatataagtgactagagagagtaattttaatatttcatggatacaaattcatgagtaatcgcaaatattgaaagaatattggtgtc |
130 |
Q |
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| T |
3533394 |
acctatttgtcttttatataagtgactagaaagagtaattttaatatttcatggatacaaattcatgagtaatcgcaaatattgaaagaatattggtgtc |
3533493 |
T |
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| Q |
131 |
caatacaaacacggtttcatgtttaaagtatttgaacttcaaaattaagaaggagacatgagacaacttttctaataaggaagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3533494 |
caatacaaacacggtttcatgtttaaagtatttgaacttcaaaattaagaaggagacatgagacaacttttctaataaggaagt |
3533577 |
T |
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