View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_50 (Length: 203)
Name: NF1449_low_50
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_50 |
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| [»] scaffold0005 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 45781330 - 45781233
Alignment:
| Q |
52 |
ccatacgcaaccacacttattttgtttatctgttatcatggctaactatttcttatatacaaccatgcttctagtaatttttgttttacctgcaaaat |
149 |
Q |
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| T |
45781330 |
ccatacgcaaccacacttattttgtttctctgttatcatggccacctatttcttatatacaaccatgcttctagtaatttttgttttactcgcaaaat |
45781233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 14565114 - 14565032
Alignment:
| Q |
52 |
ccatacgcaaccacacttattttgtttatctgttatcatggctaactatttcttatatacaaccatgcttctagtaatttttg |
134 |
Q |
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| T |
14565114 |
ccatacgcaaccaggcttattttgtttatctgttatcatggccaactatttcttatatacaaccatgcttctagtaatttttg |
14565032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 14564613 - 14564536
Alignment:
| Q |
126 |
taatttttgttttacctgcaaaataattggcttttcatttcattatcatgcttatattttacggtgcttatagtttac |
203 |
Q |
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| T |
14564613 |
taatttttgttttacatgcaaaatcattggcttttcatttcattatcatgcttatattttacggtgcttataatttac |
14564536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 441190 - 441075
Alignment:
| Q |
19 |
tttttattatatgtaagccatgactannnnnnnccatacgcaaccacacttattttgtttatctgttatcatggctaactatttcttatatacaaccatg |
118 |
Q |
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| T |
441190 |
ttttttttatatgtaagccatgattatttttttccatacgcaaccacacttattttgtttatctgttatcatggttaactatttcttatatataaccatg |
441091 |
T |
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| Q |
119 |
cttctagtaatttttg |
134 |
Q |
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| T |
441090 |
cttcttgtaatttttg |
441075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 440657 - 440580
Alignment:
| Q |
126 |
taatttttgttttacctgcaaaataattggcttttcatttcattatcatgcttatattttacggtgcttatagtttac |
203 |
Q |
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| T |
440657 |
taatttttgttttacatgcaaaatcattggcttttcatttcattatcatgcttatattttacggtgcttgtaatttac |
440580 |
T |
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Target: scaffold0005 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 252261 - 252343
Alignment:
| Q |
52 |
ccatacgcaaccacacttattttgtttatctgttatcatggctaactatttcttatatacaaccatgcttctagtaatttttg |
134 |
Q |
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| T |
252261 |
ccatacgcaaccaggcttattttgtttatctgttatcatggccaactatttcttatatacaaccatgcttctagtaatttttg |
252343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 252762 - 252839
Alignment:
| Q |
126 |
taatttttgttttacctgcaaaataattggcttttcatttcattatcatgcttatattttacggtgcttatagtttac |
203 |
Q |
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| T |
252762 |
taatttttgttttacatgcaaaatcattggcttttcatttcattatcatgcttatattttacggtgcttataatttac |
252839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 28261117 - 28261163
Alignment:
| Q |
157 |
ttttcatttcattatcatgcttatattttacggtgcttatagtttac |
203 |
Q |
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| T |
28261117 |
ttttcatttcattatcatgcttatattttacggtgcttatagtttac |
28261163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 31619346 - 31619300
Alignment:
| Q |
157 |
ttttcatttcattatcatgcttatattttacggtgcttatagtttac |
203 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31619346 |
ttttcttttcattatcatgcttatattttacggtgcttatagtttac |
31619300 |
T |
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