View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_6 (Length: 400)
Name: NF1449_low_6
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 45068318 - 45068701
Alignment:
| Q |
1 |
acacgaaatatttgaatataacttgatgtgttagtgtcgtacggacaccaaacacagctttgatgtgaagtgtcaatgctacatagatgatagtcttgat |
100 |
Q |
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| T |
45068318 |
acacgaaatatttgaatataacttgatgtgttagtgtcgtagggacaccaaacacagctttgatgtgaagtgtcaatgctacatagatgatagtcttgat |
45068417 |
T |
|
| Q |
101 |
tcttgcctgttcaacatagatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttg |
200 |
Q |
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| T |
45068418 |
tcttgcctgttcaacatagatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttg |
45068517 |
T |
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| Q |
201 |
aataacaataaaacaaaatcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaacca |
300 |
Q |
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| T |
45068518 |
aacaacaataaaacaaaatcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaacca |
45068617 |
T |
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| Q |
301 |
acatagtactgatcaatggttttcaaccatccaacatcatcatgactatgagggactaggtgaacattgagcttcccaggaaca |
384 |
Q |
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| T |
45068618 |
acatagtactgatcaatggttttcaaccatccaacatcatcatgactatgagggactaagtgaacattgagcttcccaggaaca |
45068701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 42 - 384
Target Start/End: Original strand, 3737919 - 3738260
Alignment:
| Q |
42 |
cggacaccaaacacagctttgatgtgaagtgtcaatgcta--catagatgatagtcttgattcttgcctgttcaacatagatgaatttgcgattcttgtc |
139 |
Q |
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| T |
3737919 |
cggacatcaaatacggctttgatgtgaagtctcagtgctatacatagatgatagtcttgactcttgcatgttcagcatagatgaatttgcgattcttgtc |
3738018 |
T |
|
| Q |
140 |
cgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttgaataacaataaaacaaaatcaaaatcatgcaattgaatt |
239 |
Q |
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| T |
3738019 |
cgccaacaacgctggtataagggaatcaagcacactttgaacgcatgctctctgcattcacaacaatggttaaacaacataaaaatcatggaattcaatt |
3738118 |
T |
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| Q |
240 |
gagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatc- |
338 |
Q |
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| T |
3738119 |
aaattaaagtgtgtg----tggaagaaaaagtgaatgacctgaatggtgtggttggaaccaacatagtactgatcaatggttttcaaccatccaacatca |
3738214 |
T |
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| Q |
339 |
atcatgactatgagggactaggtgaacattgagcttcccaggaaca |
384 |
Q |
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| T |
3738215 |
atcatgaccatgagggaccaagtcaacattgagcttcccaggaaca |
3738260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 32386495 - 32386585
Alignment:
| Q |
289 |
ttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatgactatgagggactaggtgaacattgagcttcccag |
379 |
Q |
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| T |
32386495 |
ttgttggaaccaacatagtactgatcaacagtcttcaaccacccaacatcatcatgagtatgagcaaccagatgaacattgagcttcccag |
32386585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 32400666 - 32400728
Alignment:
| Q |
282 |
aatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatg |
344 |
Q |
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| T |
32400666 |
aatggagttgttggatccaacgtagtactgatcaacggtcttaagccaaccaacatcatcatg |
32400728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 31848455 - 31848385
Alignment:
| Q |
274 |
ataacctgaatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatg |
344 |
Q |
| |
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| T |
31848455 |
ataacctgaatggaattgttggagccaacatagtattgatcaacagtcttaagccaaccaacatcatcatg |
31848385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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