View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_8 (Length: 376)
Name: NF1449_low_8
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 21290347 - 21290000
Alignment:
| Q |
17 |
accccccattttcaccgaatctctcccatcttcatcataaggtgcatgtgccctcnnnnnnnggagaaacagaaagggcatctttgtgtgtgagaaatgg |
116 |
Q |
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| T |
21290347 |
accccccattttcactgaatctctcccatcttcatcataaggtgcatgtgccctcaaaaagaggagaaacagaaagggcatctttgtgtgttagaaatgg |
21290248 |
T |
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| Q |
117 |
aaggaattagtgtcttgaagaaaggttctaaaggaaagaaagaagatctctatcatgttattcataaggttccttatggtgatactccttatgtcaaagc |
216 |
Q |
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| T |
21290247 |
aaggaattagtgtcttgaagaaaagttctaaaggaaagaaagaagatctctatcatgttattcataaggttccttatggtgatactccttatgtcaaagc |
21290148 |
T |
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| Q |
217 |
caaacatgctcaggtaggtacnnnnnnnnnnnnaatttcagctttactttttgttgtttgcttaattaacatgcattattgtatgtggaaattgcaccat |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21290147 |
caaacatgctcaggtaggtac--ttttttttttaatttcagctttactttttgttgtttgcttaattaatatgcattattgtatgtggaaattgcaccat |
21290050 |
T |
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| Q |
317 |
ctttatcccttttaatttgatctctaaattttatgttaca-tagtttcag |
365 |
Q |
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| T |
21290049 |
ctttatcccttttaatttgatctctaaattttatgttacattagtttcag |
21290000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 21253477 - 21253391
Alignment:
| Q |
146 |
aaaggaaagaaagaagatctctatcatgttattcataaggttccttatggtgatactccttatgtcaaagccaaacatgctcaggta |
232 |
Q |
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| T |
21253477 |
aaaggaaaaaaagaagacatttatcatgtactttacaaggttccttatggtgatagtccttatgtcagagccaaacatgctcaggta |
21253391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 11505612 - 11505689
Alignment:
| Q |
155 |
aaagaagatctctatcatgttattcataaggttccttatggtgatactccttatgtcaaagccaaacatgctcaggta |
232 |
Q |
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| T |
11505612 |
aaagatgatctttttcatgttattcataaggttccttctggggattctccttatgttaaagccaaacaggttcaggta |
11505689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 11498472 - 11498549
Alignment:
| Q |
155 |
aaagaagatctctatcatgttattcataaggttccttatggtgatactccttatgtcaaagccaaacatgctcaggta |
232 |
Q |
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| T |
11498472 |
aaagatgatctttttcatgttattcataaggttccttctggggattctccttatgttaaggccaaacaggttcaggta |
11498549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 31818205 - 31818152
Alignment:
| Q |
178 |
tcataaggttccttatggtgatactccttatgtcaaagccaaacatgctcaggt |
231 |
Q |
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| T |
31818205 |
tcataaggttcctattggtgatactccttatgttagagccaaaaatgttcaggt |
31818152 |
T |
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