View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1449_low_9 (Length: 365)
Name: NF1449_low_9
Description: NF1449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1449_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 16382071 - 16381733
Alignment:
| Q |
14 |
atattcaatcaaatcaaaccaaggctctttgctcatcatttccatgttcactttgttacactaaaataggaaaagagcaagcaactcatggaagctttat |
113 |
Q |
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| T |
16382071 |
atattcaatcaaatcaaaccaaggctctttgctcatcatttccatgttcactttgttacactaaaataggaaaagagcaagcaactcatggaagctttat |
16381972 |
T |
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| Q |
114 |
gggatttggtagacaaattgaagatttcaacactaggtgctattcttctacttgcatgtgcattttttgcacttgtttgtctttgcactattattgtact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16381971 |
gggatttggtagacaaattgaagatttcaacactaggtgctattcttctacttgcatgtgcattttttgcacttgtttgtctttgcactattattgtact |
16381872 |
T |
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| Q |
214 |
aaaaaggaaaggtagtaataataata---ataaggttttgaaccaagagggtgttatagaagagaatgagtctagttcgactatcacgacgactactact |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16381871 |
aaaaaggaaaggtagtaataataataataataaggttttgaaccaagagggtgttatagaagagaatgagtctagttcgactatcacgacgactactact |
16381772 |
T |
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| Q |
311 |
actaccaccaccactacgacgaatgttactaactctagt |
349 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
16381771 |
accaccaccaccactacgacgaatgttactaactctagt |
16381733 |
T |
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