View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_high_13 (Length: 273)
Name: NF14500_high_13
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_high_13 |
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| [»] scaffold0320 (1 HSPs) |
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Alignment Details
Target: scaffold0320 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 17753 - 17497
Alignment:
| Q |
1 |
cagaggttaaaccagagaacaaatatcacaaggacaatttgtcactgctattacagtcttgtcactaaaattagttcttctgtcaatatcctaagtgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753 |
cagaggttaaaccagagaacaaatatcacaaggacaatttgtcactgctattacagtcttgtcactaaaattagttcttctgtcaatatcctaagtgaac |
17654 |
T |
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| Q |
101 |
cattgatcaagtttttgactcccctatcgcttggctaccgcttgaacttgttacatgctttaaaaacacatgttgaacatataacaaataaaaattcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17653 |
cattgatcaagtttttgactcccctatcgcttggctacagcttgaacttgttacatgctttaaaaacacatgttgaacatataacaaataaaaattcatc |
17554 |
T |
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| Q |
201 |
tcccatcgaaagactaagggtcccatgctacagagcataaaactaagggcttgtttg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17553 |
tcccatcgaaagactaagggtcccatgctacagagcataaaactaagggcttgtttg |
17497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 28122592 - 28122324
Alignment:
| Q |
1 |
cagaggttaaaccagagaacaaatatcacaaggacaatttgtcactgctattacagtcttgtcactaaaattagttcttctgtcaatatcctaagtgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28122592 |
cagaggttaaaccagagaacaaatatcacaaggacaatttgtcactgctattacagtcttgtcactaaaattagttcttctgtcaatatcctaagtgaac |
28122493 |
T |
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| Q |
101 |
cattgatcaagtttttgactcccctatcgct-----------tggctaccgcttgaacttgttacatgctttaaaaacacatgttgaacatataacaaat |
189 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
28122492 |
cattgatcaagtttttgactcccctatagcttcttggtctaatggctacaacttgaacttgttacatgctataaaaacatatgttgaacacataacaaat |
28122393 |
T |
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| Q |
190 |
aaaaattcatctcccatcgaaagactaagggtcccat-gctacagagcataaaactaagggcttgtttg |
257 |
Q |
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||||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
28122392 |
aaaaactcatcccccatcgaaagtctaagggttgcatcgctacagagcataaaactaagggattgtttg |
28122324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 34816385 - 34816346
Alignment:
| Q |
86 |
atatcctaagtgaaccattgatcaagtttttgactcccct |
125 |
Q |
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| T |
34816385 |
atatcctaattgaactattgatcaagtttttgactcccct |
34816346 |
T |
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