View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_high_16 (Length: 243)
Name: NF14500_high_16
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 29157679 - 29157479
Alignment:
| Q |
26 |
gaataggctttccatagacatatacccatgacatgacacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggttgaattggatga |
125 |
Q |
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| T |
29157679 |
gaataggctttccatagacatatacccatgacatgaaacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggttgaattggatga |
29157580 |
T |
|
| Q |
126 |
aaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacagaag |
225 |
Q |
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| T |
29157579 |
aaaattaaaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacagaag |
29157480 |
T |
|
| Q |
226 |
a |
226 |
Q |
| |
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| |
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| T |
29157479 |
a |
29157479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 2583785 - 2583685
Alignment:
| Q |
126 |
aaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacagaag |
225 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
2583785 |
aaaattaaaagagagatggcatgtaaataaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatgtttccaaacaaagagaag |
2583686 |
T |
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| Q |
226 |
a |
226 |
Q |
| |
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| |
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| T |
2583685 |
a |
2583685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 2596628 - 2596498
Alignment:
| Q |
70 |
acaattacat-aaaagaaacaaggaaaaactgaaagttgaatggttgaattggatgaaaaattagaagagagatggcatgtaaagaaatgaataaggaaa |
168 |
Q |
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|||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| ||||||| |
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| T |
2596628 |
acaattacattaaaagaaacatggaaaaactgaaagtcgaatggttgaattggatgaaaaattaaaagagagatagaatgtaaaaaaatgaacaaggaaa |
2596529 |
T |
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| Q |
169 |
aggactaaaatgcataaatgtattagtgaca |
199 |
Q |
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|||| | ||| |||||||||||||||||||| |
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| T |
2596528 |
aggatttaaaggcataaatgtattagtgaca |
2596498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 2585051 - 2585005
Alignment:
| Q |
180 |
gcataaatgtattagtgacattcacatggttccaaacaaacagaaga |
226 |
Q |
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||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
2585051 |
gcataaatgaattagtgacatttacatgtttccaaacaaacagaaga |
2585005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 46769964 - 46769802
Alignment:
| Q |
70 |
acaattacataaaagaaacaaggaaaaactgaaa-gttgaatggttgaattggatgaaaaattaga-----agagagatggcatgtaaagaaatgaataa |
163 |
Q |
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|||||||||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||| | | ||||||| ||| ||||||||||||||| |
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| T |
46769964 |
acaattacattgaagaaagaaggaaaaactgaaaagttgaatgattgaattggatgtaaaattaaattaaaatagagatgacatataaagaaatgaataa |
46769865 |
T |
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| Q |
164 |
ggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacagaaga |
226 |
Q |
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||| | ||||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
46769864 |
ggatatggactaaaaggcataaatgtactagtgacatccacatgcttccaaacaaacagaaga |
46769802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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