View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_high_20 (Length: 221)
Name: NF14500_high_20
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 53037863 - 53037666
Alignment:
| Q |
10 |
catcatcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccata |
109 |
Q |
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| T |
53037863 |
catcatcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccata |
53037764 |
T |
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| Q |
110 |
aattggcaatgtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaact |
207 |
Q |
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| T |
53037763 |
aattggcaatgtcaaccaactaaccactcctaaatttggattcccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaact |
53037666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 39995742 - 39995888
Alignment:
| Q |
23 |
actaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaat |
119 |
Q |
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| T |
39995742 |
actaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctcctttccccacccaaaatcaagtccataaattggcaat |
39995841 |
T |
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| Q |
120 |
gtcaaccaactaaccactcctaaatttggatttccataaaatggccc |
166 |
Q |
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| T |
39995842 |
gacaaccaactagtcactcctaaattaggattccaataaaaaggccc |
39995888 |
T |
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