View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_high_21 (Length: 202)
Name: NF14500_high_21
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_high_21 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0320 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 3e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28122779 - 28122580
Alignment:
| Q |
1 |
aacgataattaattatcaatcaccaattcaacatgcaagcaaatagttaattcccttaataaaacatgaaattaatctgcatttaacaggagacgaaaag |
100 |
Q |
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| T |
28122779 |
aacgataattaattattaatcaccaattcaacatgcaagcaaatagttaattcccttaataaaacatgaaattaatgtgcatttaacaggagacgaaaag |
28122680 |
T |
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| Q |
101 |
accaaagaaagtgtgttattgacacagtaaagtctaccatgtaacggatactcagtattggatggatgggatgaaaacaatatgcatatcagaggttaaa |
200 |
Q |
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| T |
28122679 |
accaaagaaa--gtgttattgacacagtaaagtctaccatgtaacggatactcagtattggatggatgggatgaaaacaatatgcatatcagaggttaaa |
28122582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 28174185 - 28174149
Alignment:
| Q |
84 |
taacaggagacgaaaagaccaaagaaagtgtgttatt |
120 |
Q |
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| T |
28174185 |
taacaggagacaaaaagaccaaagaaagtatgttatt |
28174149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 17939 - 17741
Alignment:
| Q |
2 |
acgataattaattatcaatcaccaattcaacatgcaagcaaatagttaattcccttaataaaacatgaaattaatctgcatttaacaggagacgaaaaga |
101 |
Q |
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| T |
17939 |
acgataattaattattaatcaccaattcaacatgcaagcaaatagttaattcccttaataaaacatgaaattaatgtgcatttaacaggagacgaaaaga |
17840 |
T |
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| Q |
102 |
ccaaagaaagtgtgttattgacacagtaaagtctaccatgtaacggatactcagtattggatggatgggatgaaaacaatatgcatatcagaggttaaac |
201 |
Q |
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| T |
17839 |
ccaaagaaa--gtgttattgacacagtaaagtctaccatgtaacggatactcagtattggatggatgggatgaaaacaatatgcatatcagaggttaaac |
17742 |
T |
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