View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14500_low_1 (Length: 733)

Name: NF14500_low_1
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14500_low_1
NF14500_low_1
[»] chr1 (2 HSPs)
chr1 (26-717)||(51108812-51109493)
chr1 (363-448)||(51116634-51116719)


Alignment Details
Target: chr1 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 26 - 717
Target Start/End: Complemental strand, 51109493 - 51108812
Alignment:
Q  26 cactataggtgttgtaaagaattattttgctggtaaacaaagaaaagaaagtacttgtaatttcaatattgatcacaagtgaaaaagaaggttggacaca 125  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109493 cactataggtgttgtaaagaattattttgctcgtaaacaaagaaaagaaagtacttgtaatttcaatattgatcacaagtgaaaaagaaggttggacaca 51109394  T
Q  126 gtcacagacgcaagccaaaaaagaaggctggaaagtggaaacattcacactcactaatgtgtatttttagaagttgcacaactaactaataaacaaacac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109393 gtcacagacgcaagccaaaaaagaaggctggaaagtggaaacattcacactcactaatgtgtatttttagaagttgcacaactaactaataaacaaacac 51109294  T
Q  226 caaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatcgaatcggaaactttaggctgaataccgagaggacatttcaatttcgca 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51109293 caaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatcgaatctgaaactttaggctgaataccgagaggacatttcaatttcgca 51109194  T
Q  326 gatgttacactcacctgcttcatgcttctttctcaaattctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataa 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109193 gatgttacactcacctgcttcatgcttctttctcaaattctattcccgaacctaaaactctccctactgttatgccatattcgcattcgcttttccataa 51109094  T
Q  426 tactagacccataaatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagg 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109093 tactagacccataaatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagg 51108994  T
Q  526 gcttaattatgaacaaagaaaccttaatgcatgaatgttccttagaaacaatctcttttcaacactatcaaaattgtcatctttgctattgggaatatgt 625  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  51108993 gcttaattatgaacaaagaaaccttaatgcatgaatgttccttagaaac----------caacactatcaaaattgtcatctttgctattgggaatatgt 51108904  T
Q  626 tccatggtgattttggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcat 717  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51108903 tgcatggtgattttggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcat 51108812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 363 - 448
Target Start/End: Complemental strand, 51116719 - 51116634
Alignment:
Q  363 ttctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctc 448  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  51116719 ttctactcccaagcctaaaactctccctacggttatgccatattcacattcgcttttccatagtactagacccataaatgtttctc 51116634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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