View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_low_10 (Length: 366)
Name: NF14500_low_10
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 118 - 349
Target Start/End: Complemental strand, 11227519 - 11227288
Alignment:
| Q |
118 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaactatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactactct |
217 |
Q |
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| T |
11227519 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct |
11227420 |
T |
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| Q |
218 |
aacatgaaattatcatcttcatcactgtagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgacatttggct |
317 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11227419 |
aacatgaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgatatttggct |
11227320 |
T |
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| Q |
318 |
cttgttcattgtcatcttcttgcagtaattgc |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11227319 |
cttgttcattgtcatcttcttgcagtaattgc |
11227288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 10128187 - 10128065
Alignment:
| Q |
118 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaa--ctatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactact |
215 |
Q |
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|||||||||||||||| |||||||||||||| || |||| || ||||| || ||||||||| ||||| |||| ||||||||||||||||||| | |
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| T |
10128187 |
gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaac--ca |
10128090 |
T |
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| Q |
216 |
ctaacatgaaattatcatcttcatc |
240 |
Q |
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||||||| |||||||||| |||||| |
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| T |
10128089 |
ctaacattaaattatcatgttcatc |
10128065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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