View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_low_11 (Length: 338)
Name: NF14500_low_11
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 42574532 - 42574837
Alignment:
| Q |
24 |
aatccagtagcccttctcctgcaacaaccttaattccactcttgtaaatttcaaaactattgggcagttcactgattcagagttcagaccaatatccaat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42574532 |
aatccagtagcccttctcctgcaacaaccttaattccactcttgtaaatttcaaaactattgggcagttcactgattcagagttcagaccaatatccaat |
42574631 |
T |
|
| Q |
124 |
ttcacatgttgggaccattgctttctcaaagcttttctcataattacagaatgcaacccactgttttgcagcttaactcatcctactttaaaccgtttag |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42574632 |
ttcacatgttgggaccattgctttctcaaagcttttctcataattacagaatgcaacccactgttttgcagcttaactcatcctactttaaaccatttag |
42574731 |
T |
|
| Q |
224 |
tcaacttcctgactttaagttcctcaaaatatttgagtttgcatgctattcctttttgcagcttaggattgtcttgtgtttccaagaactagaagtgcat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
42574732 |
tcaacttcctgactttaagttcctcaaaatatttgagtttgcatgctatccctttttgcagcttaagactgtcttgtgtttccaagaactagaagtgcat |
42574831 |
T |
|
| Q |
324 |
attctt |
329 |
Q |
| |
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||||| |
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| T |
42574832 |
tttctt |
42574837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 42578365 - 42578473
Alignment:
| Q |
169 |
acagaatgcaacccactgttttgcagcttaactcatcctactttaaaccgtttagtcaacttcctgactttaagttcctcaaaatatttgagtttgcatg |
268 |
Q |
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||||||| ||||||||| ||||||||||||| |||||| ||| |||||| | |||| |||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
42578365 |
acagaattcaacccactcttttgcagcttaattcatcccactctaaaccatatagt-aacttcctgactttaatttcctcaaaatatctgggtttgcatg |
42578463 |
T |
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| Q |
269 |
ctattccttt |
278 |
Q |
| |
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|||| ||||| |
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| T |
42578464 |
ctatcccttt |
42578473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 42609222 - 42609291
Alignment:
| Q |
197 |
taactcatcctactttaaaccgtttagtcaacttcctgactttaagttcctcaaaatatttgagtttgca |
266 |
Q |
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|||||| | ||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
42609222 |
taactcgttctactataaaccgtttaatcaacttcctgactacaagttcctcaaaatgtttgggtttgca |
42609291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 27869065 - 27868968
Alignment:
| Q |
181 |
ccactgttttgcagcttaactcatcctactttaaaccgtttagtcaacttcctgactttaagttcctcaaaatatttgagtttgcatgctattccttt |
278 |
Q |
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|||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||| | | ||||||||||||| ||||| |
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| T |
27869065 |
ccactgttttgcagcttaactcattctactataaactgtttaatcaacttcctgactacaagttcctaaaaatttcagggtttgcatgctatcccttt |
27868968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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