View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14500_low_12 (Length: 318)

Name: NF14500_low_12
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14500_low_12
NF14500_low_12
[»] chr4 (1 HSPs)
chr4 (7-301)||(32566853-32567147)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 32566853 - 32567147
Alignment:
Q  7 gcaacacagagcagacactttctcaatctaaagtatccgagctacataagtcaccactcatccgcattgtctctggtgtgaatttaataataaaaatagt 106  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32566853 gcaacacacagcagacactttctcagtctaaagtatctgagctacataagtcaccactcatccgcattgtctctggtgtgaatttaataataaaaatagt 32566952  T
Q  107 gagtgtaagattgagattaataccaaacgcaatttttctccagttctgattctagaattgggacgagaaaacttggactcatacggagttctaggcctga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32566953 gagtgtaagattgagattaataccaaacgcaatttttctccagttctgattctagaattgggacgagaaaacttggactcatacggagttctaggcctga 32567052  T
Q  207 gttcccgaaccttgtcccactcctcacggctgagcattctcacagtaccttgaccttctggagcattctttatcctacgctccaacaactcttgg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32567053 gttcccgaaccttgtcccactcctcacggctgagcattctcacagtaccttgaccttctggagcattctttatcctacgctccaacaactcttgg 32567147  T

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