View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14500_low_13 (Length: 318)

Name: NF14500_low_13
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14500_low_13
NF14500_low_13
[»] chr8 (1 HSPs)
chr8 (1-312)||(29156947-29157259)
[»] chr2 (5 HSPs)
chr2 (4-312)||(2595906-2596215)
chr2 (4-312)||(2588831-2589140)
chr2 (4-312)||(2581217-2581526)
chr2 (52-312)||(2576781-2577041)
chr2 (142-186)||(14514925-14514969)
[»] chr3 (3 HSPs)
chr3 (4-312)||(21642544-21642853)
chr3 (4-312)||(21620874-21621183)
chr3 (131-206)||(3625739-3625814)
[»] chr6 (4 HSPs)
chr6 (4-312)||(30399023-30399331)
chr6 (142-186)||(6921351-6921395)
chr6 (142-186)||(6947881-6947925)
chr6 (142-186)||(20770675-20770719)
[»] chr7 (9 HSPs)
chr7 (1-312)||(46769273-46769582)
chr7 (40-205)||(36260259-36260424)
chr7 (140-206)||(19604462-19604528)
chr7 (131-205)||(36255372-36255446)
chr7 (137-202)||(29106823-29106888)
chr7 (145-205)||(36263059-36263119)
chr7 (142-205)||(660848-660911)
chr7 (131-203)||(18997588-18997660)
chr7 (142-186)||(20352120-20352164)
[»] chr4 (6 HSPs)
chr4 (146-205)||(35767024-35767083)
chr4 (142-216)||(3560959-3561033)
chr4 (142-186)||(53774865-53774909)
chr4 (142-216)||(3565739-3565813)
chr4 (131-205)||(19361448-19361522)
chr4 (131-196)||(19359152-19359217)
[»] chr1 (1 HSPs)
chr1 (139-205)||(4014963-4015029)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 29157259 - 29156947
Alignment:
Q  1 atccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaattt 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29157259 atccctcaaattatatagaattgcccgttgttcttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaattt 29157160  T
Q  100 ttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgcc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29157159 ttcaagtcagcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatgtttccatctgcc 29157060  T
Q  200 atataatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157059 atataatgaattcggttcttctataatcatgagaaaaacacaaggaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagc 29156960  T
Q  300 acagggaggcatc 312  Q
    |||||||| ||||    
T  29156959 acagggagacatc 29156947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 2596215 - 2595906
Alignment:
Q  4 cctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttc 102  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2596215 cctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttc 2596116  T
Q  103 aagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 202  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  2596115 aagtcagcaaaatcatgaaatctagtccgaagattttggtaactaattttaaggagttgagtccatggctcttcaactccaataatcttcatctgccata 2596016  T
Q  203 taatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcaca 302  Q
    |||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |    
T  2596015 taatgaattcagttcttctgtaatcatgagaaaaacacaaggagtctttcaatatacataaagatggcggcttaatagatgacatttcatcaaaaccaga 2595916  T
Q  303 gggaggcatc 312  Q
    ||||||||||    
T  2595915 gggaggcatc 2595906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 2589140 - 2588831
Alignment:
Q  4 cctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttc 102  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  2589140 cctcaaattatgtagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaattttcc 2589041  T
Q  103 aagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 202  Q
    |||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  2589040 aagtcatcaaaatcatgaaatctagttcgaagattttggtagctaattttaaggagttgagtccatggctcttcaactccaatgatcttcatctgccata 2588941  T
Q  203 taatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcaca 302  Q
     ||||||||| ||||| |  | |||||||||||||||||| || ||||||||||||||||||||||  ||||||| | ||||||||||||||||| ||||    
T  2588940 caatgaattcagttctccagttatcatgagaaaaacacaaggagtctttcaatatacataaagatgccggcttaacatatgacatttcatcaaaaccaca 2588841  T
Q  303 gggaggcatc 312  Q
    ||||||||||    
T  2588840 gggaggcatc 2588831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 2581526 - 2581217
Alignment:
Q  4 cctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttc 102  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |    
T  2581526 cctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatcattgtgatcagaaaggtgcaaaggcaacaattgacaattttcc 2581427  T
Q  103 aagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 202  Q
    |||||  ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||  || | |||||||||||    
T  2581426 aagtcatcaaaagcatgatatctagttcgaagaatttggtaactaattttaaggagttgagtccatgactcgtcaactccaatgatcttcatctgccata 2581327  T
Q  203 taatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcaca 302  Q
    |||  ||||| ||||||||   |||||||||||||||||| || || |||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||    
T  2581326 taaccaattcagttcttctgacatcatgagaaaaacacaaggagtccttcaatatacataatgatggcggcttaacagatgacatttcatcaaaaccaca 2581227  T
Q  303 gggaggcatc 312  Q
     |||||||||    
T  2581226 tggaggcatc 2581217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 52 - 312
Target Start/End: Complemental strand, 2577041 - 2576781
Alignment:
Q  52 agtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattt 151  Q
    ||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||| ||  ||||| |||||||||||||||    
T  2577041 agtgtatcgctgtgatcagaaaggtgcaatggcaacaactgaaaatttttcaagtcagcaaaatcatgatatcttgtctgaagattttggtaactaattt 2576942  T
Q  152 taaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattcggttcttctataatcatgagaaaaacacaacgaatcttt 251  Q
    |||||||||||||||||||||||||||||||||  || | |||||||||||||| |||||| |||||||| |||||||||||||||||||| || || ||    
T  2576941 taaggagttgagtccatggctcttcaactccaatgatcttcatctgccatataacgaattcagttcttctgtaatcatgagaaaaacacaaggagtcctt 2576842  T
Q  252 caatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatc 312  Q
     |||||||||| |||||| ||||||| ||||||| ||||||||||| || |||||||||||    
T  2576841 gaatatacatacagatggcggcttaacagatgacgtttcatcaaaaccagagggaggcatc 2576781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 14514969 - 14514925
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaat 186  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  14514969 taactaattttaaggaattgagtccaagaatcttcaactccaaat 14514925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 312
Target Start/End: Original strand, 21642544 - 21642853
Alignment:
Q  4 cctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttc 102  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| |    
T  21642544 cctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgatccgaaaggtgcaatggcaacaattgacatttttcc 21642643  T
Q  103 aagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 202  Q
    ||||| |||||||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||| ||| ||||| |||||    
T  21642644 aagtcagcaaaatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacggctctttaactccaaatgttttcatcttccata 21642743  T
Q  203 taatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcaca 302  Q
    |||||||||| |||||| | |||||||||||||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||| ||| || |    
T  21642744 taatgaattcagttcttttgtaatcatgagaaaaacacaaggagtctttcaatatacataaagatggcagcttaatagatgacatttcatccaaaccaaa 21642843  T
Q  303 gggaggcatc 312  Q
    ||||||||||    
T  21642844 gggaggcatc 21642853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 312
Target Start/End: Original strand, 21620874 - 21621183
Alignment:
Q  4 cctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttc 102  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||| |    
T  21620874 cctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgctccgaaaggtgcaatggcaacaattgacatttttcc 21620973  T
Q  103 aagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 202  Q
    ||||| |||||||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||| | |||||||||||||||| ||| ||||| |||||    
T  21620974 aagtcagcaaaatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacgcctcttcaactccaaatgttttcatcttccata 21621073  T
Q  203 taatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcaca 302  Q
    |||||||||| |||||| | ||||||||||||||||| || || |||||||||||||||||| ||||  |||||||||||||||||||||||||| || |    
T  21621074 taatgaattcagttcttttgtaatcatgagaaaaacagaaggagtctttcaatatacataaatatggcagcttaatagatgacatttcatcaaaaccaga 21621173  T
Q  303 gggaggcatc 312  Q
    ||||||||||    
T  21621174 gggaggcatc 21621183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 3625814 - 3625739
Alignment:
Q  131 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataat 206  Q
    ||||| |||| |||||||||||||| | ||||||||| | ||||||||| |||||| | | ||| |||||||||||    
T  3625814 gaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataat 3625739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 30399331 - 30399023
Alignment:
Q  4 cctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttc 102  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||| |    
T  30399331 cctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatagttgtgatccgaaaggtgcaatggcaacaattgacaattttcc 30399232  T
Q  103 aagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 202  Q
    ||||| |||||||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||| ||||||||||||| |||| ||| ||||| |||||    
T  30399231 aagtcagcaaaatcatgatatctagtccgaagattttggcagctaattttaaggagttgagtccacggctcttcaactctaaatgttttcatcttccata 30399132  T
Q  203 taatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcaca 302  Q
    |||||||||  |||||| | ||||||| || ||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||||||| || |    
T  30399131 taatgaatttagttcttttgtaatcattag-aaaacacaaggagtctttcaatatacataaagatggcagcttaatagatgacatttcatcaaaaccaga 30399033  T
Q  303 gggaggcatc 312  Q
    ||||||||||    
T  30399032 gggaggcatc 30399023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 6921351 - 6921395
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaat 186  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  6921351 taactaattttaaggaattgagtccaagattcttcaactccaaat 6921395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 6947881 - 6947925
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaat 186  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  6947881 taactaattttaaggaattgagtccaagattcttcaactccaaat 6947925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 20770719 - 20770675
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaat 186  Q
    |||||||||||||||| |||| |||||| |||||||| |||||||    
T  20770719 taactaattttaaggaattgaatccatgactcttcaattccaaat 20770675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 46769582 - 46769273
Alignment:
Q  1 atccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaattt 99  Q
    |||||||||||||||||||||||| || |||| |||||| || ||||||||| |||||||  | |||| | |||||||||||||| |||| ||||||| |    
T  46769582 atccctcaaattatatagaattgctcgctgttcttgattgttggccaatattcgtgtatcactttgatcataaaggtgcaatggcgacaactgacaatat 46769483  T
Q  100 ttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgcc 199  Q
    | |||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||    
T  46769482 tccaagtcagcaaaatcatgaaatctagtccgaagattttggtaactaattttaagaagttgagtccaaggctcttcaactccgaatattttcatctgcc 46769383  T
Q  200 atataatgaattcggttcttctataatcatgagaaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagc 299  Q
    | ||||||||||| |||||| |  ||||||||||||| ||||| ||  | ||||||||||||| |||    ||||||| |  |||||||||||||||| |    
T  46769382 acataatgaattcagttcttttgaaatcatgagaaaagcacaaggagcccttcaatatacatacaga---cggcttaacatttgacatttcatcaaaacc 46769286  T
Q  300 acagggaggcatc 312  Q
    ||  |||||||||    
T  46769285 acgaggaggcatc 46769273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 36260424 - 36260259
Alignment:
Q  40 ttagccaatattagtgtatcgttgtgataagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagttt 139  Q
    ||||||||||||||||||||    |||| ||||||||||||||||||| ||| | ||  || ||||||  ||||  || ||  | || | |||||| |||    
T  36260424 ttagccaatattagtgtatcaccatgatcagaaaggtgcaatggcaaccatttagaaagttccaagtcaacaaagccacgatgtatactccgaagatttt 36260325  T
Q  140 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 205  Q
    | || ||||||||||  |||||| |||| | ||||||||||||||||  |||||||| ||||||||    
T  36260324 gatagctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataa 36260259  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 19604462 - 19604528
Alignment:
Q  140 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataat 206  Q
    |||||||||||||||||| ||||||||| |  |||||||||||||||   | |||||||||||||||    
T  19604462 ggtaactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataat 19604528  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 36255446 - 36255372
Alignment:
Q  131 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 205  Q
    ||||| |||| || |||| ||||| |||||||||||| | |||||||||||||||| ||||||| | ||||||||    
T  36255446 gaagattttgatagctaactttaatgagttgagtccaagactcttcaactccaaatttttccattttccatataa 36255372  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 29106888 - 29106823
Alignment:
Q  137 tttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccata 202  Q
    ||||||||||||||||||  ||||||||||| | ||||||||| |||||| | | |||||||||||    
T  29106888 tttggtaactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccata 29106823  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 36263119 - 36263059
Alignment:
Q  145 ctaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 205  Q
    |||| ||||| |||||||||||| | ||||||||||||||||  |||||||| ||||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataa 36263059  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 660848 - 660911
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 205  Q
    |||||||||||||||| ||||||||| | ||||||||||| ||||   | ||||||||||||||    
T  660848 taactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataa 660911  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 18997588 - 18997660
Alignment:
Q  131 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatat 203  Q
    |||||||| ||||||||||||||||||  |||||||| | ||  ||||||||||||   | ||||||||||||    
T  18997588 gaagagttaggtaactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatat 18997660  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 20352164 - 20352120
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaat 186  Q
    |||||||||||||  |||||||||||||  |||||||||||||||    
T  20352164 taactaattttaaaaagttgagtccatgaatcttcaactccaaat 20352120  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 35767083 - 35767024
Alignment:
Q  146 taattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 205  Q
    ||||||||||||||||| |||| | ||||||||||||||||  |||||||| ||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataa 35767024  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 3560959 - 3561033
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattcggtt 216  Q
    |||||||||||||| | ||||||||| | ||||||||| |||||| ||| ||||||||| ||||| || ||||||    
T  3560959 taactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtt 3561033  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 53774909 - 53774865
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaat 186  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  53774909 taactaattttaaggaattgagtccaagactcttcaactccaaat 53774865  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 3565813 - 3565739
Alignment:
Q  142 taactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataatgaattcggtt 216  Q
    |||||||||||||| | ||||||||| | ||||||||| ||||||   | ||||||||||||||| || ||||||    
T  3565813 taactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggtt 3565739  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 19361522 - 19361448
Alignment:
Q  131 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 205  Q
    ||||| |||| || |||||||||| ||||||||||||   |||||||||| |||||  |||||||| ||||||||    
T  19361522 gaagattttgatacctaattttaatgagttgagtccaaaactcttcaacttcaaattattccatcttccatataa 19361448  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 19359217 - 19359152
Alignment:
Q  131 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatct 196  Q
    ||||| |||| || ||||||||||  ||||||||||| | ||||||||||||||||  ||||||||    
T  19359217 gaagattttgatacctaattttaataagttgagtccaagactcttcaactccaaattcttccatct 19359152  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 4014963 - 4015029
Alignment:
Q  139 tggtaactaattttaaggagttgagtccatggctcttcaactccaaatatttccatctgccatataa 205  Q
    |||||||||| |||||||| ||||||||| |  |||||||| |||||| | | ||||||||||||||    
T  4014963 tggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataa 4015029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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