View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_low_16 (Length: 258)
Name: NF14500_low_16
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 34646807 - 34647050
Alignment:
| Q |
3 |
acaacaacaaagaagttaaaagcttatgtggagaaagaaaatggtcgatggataaaagctacgtgaacgaatcgagtaggtaagttcacttctaatgagt |
102 |
Q |
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| T |
34646807 |
acaacaacaaataagttaaaagcttttgtggagaaagaaaatggtcgatggataaaagctacgtgaacgaatcgagtaggtaagttcacttctaatgagt |
34646906 |
T |
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| Q |
103 |
tctaagagttatgtgaataa--gggaatcaaatgtccattaattacaattctaaggttcctttaataaaatgacgccgtggaaagaaaaaataaataatt |
200 |
Q |
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| T |
34646907 |
tctaagagttatgtgaataaaagggaatcaaatgtccattaattacaattctaaggttcctttaataaaatgatgccgtggaaagaaaaaataaataatt |
34647006 |
T |
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| Q |
201 |
caaagtaagatcaaaagtaagaacccaataaagaattttggact |
244 |
Q |
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| T |
34647007 |
caaagtaagatcaaaagtaagaacccaataaagaattttggact |
34647050 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 15673719 - 15673668
Alignment:
| Q |
12 |
aagaagttaaaagcttatgtggagaaagaaaatggtcgatggataaaagcta |
63 |
Q |
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| T |
15673719 |
aagaagtttaaagcttttgtggagaaagaaagtggtcgacagataaaagcta |
15673668 |
T |
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