View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_low_2 (Length: 615)
Name: NF14500_low_2
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 14 - 601
Target Start/End: Original strand, 43224179 - 43224766
Alignment:
| Q |
14 |
caaaggtccagaatagcaaaccgcagaaattttaaagatggagagacgtaacgtaacaaaagacactataatagcatgtgtcagtaaggtgttcacggtg |
113 |
Q |
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| T |
43224179 |
caaaggtccagaatagcaaaccgcagaaattttaaagatggagagacgtaacgtaataaaagacactataatagcatgtgtcagtaaggtgttcacggtg |
43224278 |
T |
|
| Q |
114 |
tgaaacatagccnnnnnnncctgctgtttagtcagcaatttaaatacaacatgcatattgatggcacatactgacattttcatcgaacaaatttaatgtc |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224279 |
tgaaacatagccaaaaaaacctgctgtttagtcagcaatttaaatacaacatgcatattgatggcacatactgacattttcatcgaacaaatttaatgtc |
43224378 |
T |
|
| Q |
214 |
aatgtcaggttaagcttcctctccaattatttgtaggaagctacaatcattatcataccatggtaattacaagagtcactctacatagccggaaaaaata |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224379 |
aatgtcaggttaagcttccactccaattatttgtaggaagctacaatcattatcataccatggtaattacaagagtcactctacatagccggaaaaaata |
43224478 |
T |
|
| Q |
314 |
atgaaaatttacaaatataagttatattcaagcatgatattcctattcaagtatgtaaatagtggaatatttacaaaacccacatcatgcctataaaagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43224479 |
atgaaaatttacaaatataagttatattcaagcatgatattcctattcaagtatgtaaatggtggaatatttacaaaacccacatcatgcctataaaagt |
43224578 |
T |
|
| Q |
414 |
tactttgtgcgacaatgactttatgcatgatttcgtggtgatttaatgacaaaaatgcagctagctaatgcagaactcgatatacatttacaaagcgtca |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224579 |
tactttgtgcgacaatgactttatgcatgatttcgtggtgatttaatgacaaaaatgcagctagctaatgcagaactcgatatacatttacaaagcgtcc |
43224678 |
T |
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| Q |
514 |
agaccaggtgatgaacataaaatgcctccatcagatttgccactagaaagattttgcatctgctgatgaattctgaaatgttgagcat |
601 |
Q |
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||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43224679 |
agaccaggtgatgaacataaaatgcctccatcaaattagctactagaaagattttgcatctgctgatgaattctgaaatgtcgagcat |
43224766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 35926195 - 35926296
Alignment:
| Q |
150 |
aatttaaatacaacatgcatattgatggcacatactgaca--------ttttcatcgaacaaatttaatgtcaatgtcaggttaagcttcctctccaatt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
35926195 |
aatttaaatacaacatgcatattgatggcacatactaacactgacacattttcatcgaacaaatttaatgtcaatgtcaggttaaact---tctccaatt |
35926291 |
T |
|
| Q |
242 |
atttg |
246 |
Q |
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||||| |
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| T |
35926292 |
atttg |
35926296 |
T |
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