View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_low_3 (Length: 582)
Name: NF14500_low_3
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 22 - 563
Target Start/End: Original strand, 24239699 - 24240239
Alignment:
| Q |
22 |
ataggaaaagcgttctctcacttgcattaatctgcattgtcttcgccgccggtgtccgaggtcagtcagctccaacaacatcaccagcttcg----ggta |
117 |
Q |
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| T |
24239699 |
ataggaaaagcgttctctcacttgcattaatatgcattgtcttcgccgccggtgtccgaggtcaggcagctccaacaacatcaccagcttcgatcaggta |
24239798 |
T |
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| Q |
118 |
gaggttgagaaagctaatacatgcgttgtggggcgcccaaatttgtcatgttgctttattaattgtactccacgctgcatggatgactgcaagcaaaagg |
217 |
Q |
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| T |
24239799 |
gaggttgagaaagctaatacatgcgttgtggggcgcccaaatttgtcatgttgctttatgaattgtactccacgctgcatggatgactgcaagcaaaagg |
24239898 |
T |
|
| Q |
218 |
gctttcgttttggcggttattgcgattttgtaattaatcaaaaattatgttgctgcgttaccaattgagtgagttctagtgtttgtagtatgaaaataac |
317 |
Q |
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| T |
24239899 |
gctttcgttttggcggttattgcgaatttgtaattgatcaaaaattatgttgctgcgttaccaattgagtgagttctagtgtttgtagtatgaaaataac |
24239998 |
T |
|
| Q |
318 |
atgcatgtaacgcttctaaaataaaataatgacctactttttaactatctatttagaaccttttgcaggtagattaccttggtgaacatttcaaagaaat |
417 |
Q |
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| T |
24239999 |
atgcatgtaatgcttctaaaataaaataatgacctactttttaactatctatttagaaccttctgcaggtagattaccttggtgaacatttcaaagaaat |
24240098 |
T |
|
| Q |
418 |
ttcatttctagattccctctacaatggaaaacgatggttaaataaattaattatgagttatatgactgacttgttctctaattttctttatatcagcact |
517 |
Q |
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| T |
24240099 |
ttcatttctagattccctctacaatggaaaacgatggt----taaactaattatgagttatatgattgacttgttctctaattttctttatatcagcact |
24240194 |
T |
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| Q |
518 |
tagattttcaatcaattgagttgctataccattaggcccctcaggc |
563 |
Q |
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| T |
24240195 |
tagattttcaatcaattgagttgctataccatta-gcccctcaggc |
24240239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 403 - 558
Target Start/End: Complemental strand, 24065775 - 24065622
Alignment:
| Q |
403 |
acatttcaaagaaatttcatttctagattccctctacaatggaaaacgatggttaaataaattaattatgagttatatgactgacttgttctctaatttt |
502 |
Q |
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| T |
24065775 |
acatttcaaagaaatttcatttctagattctctttacattggaaaacaatggttaaataaataaattatgagt--tatgacttacttgttctctaatttt |
24065678 |
T |
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| Q |
503 |
ctttatatcagcacttagattttcaatcaattgagttgctataccattaggcccct |
558 |
Q |
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|||| |||||||| | |||||| ||||||||||||| | ||||||||| ||||| |
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| T |
24065677 |
gtttacatcagcaccttgattttgaatcaattgagttaccgtaccattagacccct |
24065622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 5788007 - 5788049
Alignment:
| Q |
27 |
aaaagcgttctctcacttgcattaatctgcattgtcttcgccg |
69 |
Q |
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|||| |||||||||||| ||||| ||||||||||||||||||| |
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| T |
5788007 |
aaaaacgttctctcactcgcattgatctgcattgtcttcgccg |
5788049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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