View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_low_4 (Length: 571)
Name: NF14500_low_4
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 53 - 557
Target Start/End: Complemental strand, 867556 - 867051
Alignment:
| Q |
53 |
aaaatcattttctcctcttatagtcgtaacacatgcaacataatagcctaatgttctaacattcacatggtgtgtcactttcaattcatgatcctgacta |
152 |
Q |
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| T |
867556 |
aaaatcattttctcctcttataatcgtaacacatgcaacataatagcctaatgttctaacattcacatggtgtgtcactttcaattcatgatcctgacta |
867457 |
T |
|
| Q |
153 |
attcttactaatgaaattttgttagctgtcttttctttttagggaattatactagcttgttttcttctaacaaaatttgcgnnnnnnnnnnnnnnnnnnn |
252 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
867456 |
attcttactaatgaaattttgttagttgtcttttctttttagggaattatactagcttgttttcttctaacaaaatttgcgaaaaaataaaaataaaaaa |
867357 |
T |
|
| Q |
253 |
ttgatagcaaaactattaattacagtttgatgcatgtttgcttttgatcatagtagtaaaattgtttatcc-gtaagtacaacgcatatgataaatgttt |
351 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
867356 |
ttgataccaaaactattaattacagtttgatgcatgtttgcttttgatcatagtggtaaaattgtgtatcctgtaagtacaacgcatatgataaatgttt |
867257 |
T |
|
| Q |
352 |
gtgaaacaacatagttttaaataaaaatgctatttgcaaatcataaagtcaaatataatcttaatatgtcacccaacattactttatacataaactaatt |
451 |
Q |
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| T |
867256 |
gtgaaacgacataattttaaataaaaatgttatttgcaaatcataaagtctaatataatcttaatctgtcacccaacattacattaaacataaactaatt |
867157 |
T |
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| Q |
452 |
tagaaatcaaaataacaacttcctatatgtatactataatcttaatttccccaacacaatgaattggaaatcaagataacaattttctatatataaccta |
551 |
Q |
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| T |
867156 |
tagaaatcaaaataacaacttcttatatgtatactataatcttaatttccccaacacaatgaattggaaatcaagataacaattttctatatataaccta |
867057 |
T |
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| Q |
552 |
tatatt |
557 |
Q |
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|||||| |
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| T |
867056 |
tatatt |
867051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 860804 - 860835
Alignment:
| Q |
116 |
cacatggtgtgtcactttcaattcatgatcct |
147 |
Q |
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| T |
860804 |
cacatggtgtgtcactttcaattcatgatcct |
860835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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