View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14500_low_5 (Length: 529)
Name: NF14500_low_5
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 80 - 513
Target Start/End: Complemental strand, 35702773 - 35702336
Alignment:
| Q |
80 |
aaaacctgtagcaacaacggtagttatagatccaacgaaaccgtaaacttcagaaggtttagggccatgatcagcagacaaagcagaggcagagttgttt |
179 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35702773 |
aaaacctgtagcaacaacggtagttatagatccaacaaaaccgtaaacttcagaaggtttagggccatgatcagctgacaaagcagaggcagagttgttt |
35702674 |
T |
|
| Q |
180 |
ttgtcatcggaatcaagaaatgacacagttgccctccgctttcttgaaagactcagtgttcttcttggactgttcacagaccgaggactttccattctga |
279 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35702673 |
ttgtcatcggaatcaagaaatgacacagtcgccctccgctttcttgaaagactcagtgttcttcttggactgttgacagaccgaggactttccattctga |
35702574 |
T |
|
| Q |
280 |
tccagggttgcaaatcattcaactttaattaataattataatcatat-attctaaatttacaatgtacaacaaaaaattccatagaaatcaattaacaat |
378 |
Q |
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| T |
35702573 |
tccagggttgcaaatcattcaactttaattaataattataatcatataattctaaatttacaatgtacaacaaaaaattccatagaaatcaattaacaat |
35702474 |
T |
|
| Q |
379 |
aacaacaatctccaattttgagaaaat---caacaacaattctcaattttgaagattattacaaaatccccaaatcaaaaatttccaaaatcacaaaaca |
475 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35702473 |
aacaacaatctccaattttgagaaaatcaacaacaacaattctcaattttaaagaatattacaaaatccccaaatcaaaaaattccaaaatcacaaaaca |
35702374 |
T |
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| Q |
476 |
ttgattcattacctgtgtatgtggtggtcggtggagag |
513 |
Q |
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| T |
35702373 |
ttgattcattacctgtgtatgtggtggtcggtggagag |
35702336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 80 - 272
Target Start/End: Complemental strand, 7955653 - 7955461
Alignment:
| Q |
80 |
aaaacctgtagcaacaacggtagttatagatccaacgaaaccgtaaacttcagaaggtttagggccatgatcagcagacaaagcagaggcagagttgttt |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |
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| T |
7955653 |
aaaacctgtagcaacaacggtagttatagatccaacgaaaccgtaaacttcagaaggcttagggccatgatcccttgacaaaccagaggcagagttgttt |
7955554 |
T |
|
| Q |
180 |
ttgtcatcggaatcaagaaatgacacagttgccctccgctttcttgaaagactcagtgttcttcttggactgttcacagaccgaggactttcc |
272 |
Q |
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| T |
7955553 |
ttatcatcggaatcgagaaatgacacagttgccctccgctttctcgatagactcagtgttcttcttggactgttgacagaccgaggactttcc |
7955461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35702973 - 35702925
Alignment:
| Q |
1 |
ttcacaaaggaaaacgaacaaagtataaat-aacaaaatgccacaggaa |
48 |
Q |
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|||||||||||||| ||||||||||||||| || ||||||||||||||| |
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| T |
35702973 |
ttcacaaaggaaaatgaacaaagtataaataaaaaaaatgccacaggaa |
35702925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 7955199 - 7955158
Alignment:
| Q |
373 |
aacaataacaacaatctccaattttgagaaaatcaacaacaa |
414 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||| |
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| T |
7955199 |
aacaataagaaaaatctccaattttgagcaaatcaacaacaa |
7955158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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