View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14500_low_6 (Length: 438)
Name: NF14500_low_6
Description: NF14500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14500_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 45126934 - 45127340
Alignment:
| Q |
14 |
caaaggcatgtcataggatgtagtgtgtccatgttcaaatccaccaagagcagtggcagagtaagcagaatatagccacgcagctagagcaggacaacat |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45126934 |
caaaggcatgtcatatgatgtagtgtgtccatgttcaaatccaccaagagcagtggcagagtaagcagaatatagccacgcagctagagcaggacaacat |
45127033 |
T |
|
| Q |
114 |
cggctacggtgaagttcatcatcagcagcatcatgtttgttggatttggaactgcatgcgttttttattccattcaagtgttcatctgagagacttaaag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45127034 |
cggctacggtgaagttcatcatcagcagcatcatgtttgttggatttggaactgcatgcgtttttgattccattcaagtgttcatctgagagacttaaag |
45127133 |
T |
|
| Q |
214 |
ggcatcttgcaacatcagcttgttcaggaaaggcagggattgttccttttgaagatgaagatggatttggtgtgagtggttgaactgttgctgcatcagg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45127134 |
ggcatcttgcaacatcagcttgttcaggaaaggcagggattgttccttgtaaagatgaagatggatttggtgtgagtggttgaactgttgctgcatcagg |
45127233 |
T |
|
| Q |
314 |
gatagggatagtgataggtagagacagatagcaaggaatgaataagatgagaagaagggtattgaaagatggtagtgtcagtgtcatgatgtataataag |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45127234 |
gatagggatagggataggtagagacagatagcaaggaatgaataagatgagaagaagggtattgaaagatggtagtgtcagtgtcatgatgtataataag |
45127333 |
T |
|
| Q |
414 |
agagaag |
420 |
Q |
| |
|
||||||| |
|
|
| T |
45127334 |
agagaag |
45127340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University