View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14501_high_1 (Length: 662)

Name: NF14501_high_1
Description: NF14501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14501_high_1
NF14501_high_1
[»] chr4 (6 HSPs)
chr4 (313-502)||(19178690-19178877)
chr4 (90-291)||(19178413-19178614)
chr4 (200-278)||(46557223-46557301)
chr4 (90-169)||(43129218-43129291)
chr4 (328-421)||(3066924-3067017)
chr4 (323-383)||(3065788-3065848)
[»] chr3 (3 HSPs)
chr3 (322-401)||(1691648-1691727)
chr3 (337-421)||(1690754-1690838)
chr3 (353-416)||(24693794-24693857)
[»] chr5 (2 HSPs)
chr5 (323-421)||(1277799-1277898)
chr5 (220-287)||(43273537-43273604)
[»] chr8 (2 HSPs)
chr8 (350-421)||(16219826-16219897)
chr8 (323-421)||(16222511-16222611)
[»] chr2 (2 HSPs)
chr2 (323-421)||(12172419-12172518)
chr2 (346-415)||(12173401-12173470)
[»] chr7 (2 HSPs)
chr7 (221-278)||(10087906-10087963)
chr7 (238-278)||(29538085-29538125)
[»] chr1 (4 HSPs)
chr1 (218-262)||(8875288-8875332)
chr1 (227-278)||(9853667-9853718)
chr1 (323-389)||(45428574-45428641)
chr1 (351-384)||(45427551-45427584)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 9e-78; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 313 - 502
Target Start/End: Original strand, 19178690 - 19178877
Alignment:
Q  313 aacaattttcttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcat 411  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19178690 aacaattttcttttataaaacatgttttttgattcccttatttaaaaagtcaacaaattttttggtccccctcccc-tcagaatgatgtggcaggctcat 19178788  T
Q  412 taatgccatgtaaacgtgctacttttgacggaatagatttatgccaagcccttatcaatgatggatttggcgagacaattactcccgtcat 502  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  19178789 taatgccatgtaagcgtgcta--tttgacggaatagatttatgccaagcccttgccaatgatggatttggcgagacaattactcctgtcat 19178877  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 19178413 - 19178614
Alignment:
Q  90 atgcaaattaacctgaagagggaaatcaattatggtacacttactaataataatagataatgattatttcattatgctat-------ttgggggaccgga 182  Q
    |||||||||||| |||||||||||||||||||||||| |||       ||||||| ||||||||||||||||||||||||       |||||||||||||    
T  19178413 atgcaaattaacgtgaagagggaaatcaattatggtatact-------aataatacataatgattatttcattatgctatgcttaatttgggggaccgga 19178505  T
Q  183 atggtgcactcttgcccattatgatggaaattttgaggtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaactatcgt 282  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  19178506 atggtgcactcttgcccattatgatggaaaatttgaggtttgaagctccgcagctgttaaccgccaatggaaaataaccacatcggtagttaactatcgt 19178605  T
Q  283 cggttactc 291  Q
    |||||||||    
T  19178606 cggttactc 19178614  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 46557223 - 46557301
Alignment:
Q  200 attatgatggaaattttgaggtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 278  Q
    ||||||||||||| ||| |||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||    
T  46557223 attatgatggaaaatttcaggtttgaagctccgcggcaattaactgccgatgaaaaataaccacatcggtagttaacta 46557301  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 43129218 - 43129291
Alignment:
Q  90 atgcaaattaacctgaagagggaaatcaattatggtacacttactaataataatagataatgattatttcattatgctat 169  Q
    |||||||||||| ||||||||||||||||||||||||   || |   |||||||| ||||| ||||||||||||||||||    
T  43129218 atgcaaattaacgtgaagagggaaatcaattatggta---ttgc---taataatatataattattatttcattatgctat 43129291  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 3067017 - 3066924
Alignment:
Q  328 taaaacatgtttttgattccct-tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 421  Q
    ||||||||||||||   ||||| |||||||||| ||||||| ||||||| ||||| |||||||||  |||||||| || ||||||||||| ||||    
T  3067017 taaaacatgttttttgatccctctatttaaaaaatcaacaatttttttgttcccc-tccccctcaagatgatgtgacatgctcattaatgacatg 3066924  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 3065788 - 3065848
Alignment:
Q  323 ttttataaaacatgtttttgattcccttatttaaaaagtcaacaaattttttggtccccct 383  Q
    |||| ||||| |||||||| | || | ||||||||| || |||||||||||||||||||||    
T  3065788 ttttctaaaatatgttttttaatcgcctatttaaaatgttaacaaattttttggtccccct 3065848  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 322 - 401
Target Start/End: Complemental strand, 1691727 - 1691648
Alignment:
Q  322 cttttataaaacatgtttttgattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtg 401  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  1691727 cttttttaaaacatgttttttatccccctatttaaaaagtcaacaaattttttgatctccctccccctcaggatgatgtg 1691648  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 1690754 - 1690838
Alignment:
Q  337 tttttgattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 421  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||  || | |||||| ||||||||||| ||||    
T  1690754 tttttgatccccttattcaaaaagtcaacatattttttggtccccctccccctcatgattacgtggcatgctcattaatgacatg 1690838  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 24693857 - 24693794
Alignment:
Q  353 ttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatg 416  Q
    ||||||| |||||||||||||||||||||||| | || |   |||||||||| |||||||||||    
T  24693857 ttaaaaaatcaacaaattttttggtccccctctctcttaaggtgatgtggcatgctcattaatg 24693794  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 421
Target Start/End: Complemental strand, 1277898 - 1277799
Alignment:
Q  323 ttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaatt-ttttggtccccctccccctcagaatgatgtggcaggctcattaatgccat 420  Q
    ||||||||||||||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||| |||| ||||||| ||| ||||||||||| |||    
T  1277898 ttttataaaacatgttttttgatccccctatttaaaaagttaacaaatttttttggtccccctccccttcaggatgatgt-gcatgctcattaatgacat 1277800  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 43273537 - 43273604
Alignment:
Q  220 gtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaactatcgtcggtt 287  Q
    |||| ||||||| | || ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  43273537 gtttaaagctccacggcagttaactgctgatggaaaataaccacatcggtagttaactatcgccggtt 43273604  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 16219897 - 16219826
Alignment:
Q  350 tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 421  Q
    |||||||||||| |||||||||||||||||||||||| | | ||||||||||||| ||||||||||| ||||    
T  16219897 tatttaaaaagtgaacaaattttttggtccccctccctccctgaatgatgtggcatgctcattaatgacatg 16219826  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 323 - 421
Target Start/End: Complemental strand, 16222611 - 16222511
Alignment:
Q  323 ttttataaaacatgttttt-gattccct-tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccat 420  Q
    |||| |||||||||||||| ||| |||  |||||||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||||| |||    
T  16222611 ttttctaaaacatgttttttgatcccccctatttaaaaagtgaacaaattttttggtccccctcccccctcggatgatgtggcatgctcattaatgacat 16222512  T
Q  421 g 421  Q
    |    
T  16222511 g 16222511  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 323 - 421
Target Start/End: Original strand, 12172419 - 12172518
Alignment:
Q  323 ttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 421  Q
    |||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||||| |||||||  |||| ||||||||| | ||||||||||| ||||    
T  12172419 ttttctaaaacatgttttttgacccccctatttaaaaagtcaacaaattttttggtcaccctccctttcaggatgatgtggtatgctcattaatgacatg 12172518  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 12173470 - 12173401
Alignment:
Q  346 cccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaat 415  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||| | ||||||||    
T  12173470 cccttgtttaaaaagtcaacaaattttttgctcaccctccccctcaggatgatgtggcatgttcattaat 12173401  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 10087963 - 10087906
Alignment:
Q  221 tttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 278  Q
    ||||||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||    
T  10087963 tttgaagctccgcggcagtttactgtcgatggaaaataaccacatcgatagttaacta 10087906  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 29538085 - 29538125
Alignment:
Q  238 gttaactgccgatggaaaataaccacatcggtagttaacta 278  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  29538085 gttaactgccgatgaaaaataaccacatcgaaagttaacta 29538125  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 8875332 - 8875288
Alignment:
Q  218 aggtttgaagctccgcagcggttaactgccgatggaaaataacca 262  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||    
T  8875332 aggtttgaagctctgcagcagttaattgccgatggaaaataacca 8875288  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 9853667 - 9853718
Alignment:
Q  227 gctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 278  Q
    |||||||||| ||||||| || ||||||||||||||||||  ||||||||||    
T  9853667 gctccgcagcagttaacttccaatggaaaataaccacatcaatagttaacta 9853718  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 45428641 - 45428574
Alignment:
Q  323 ttttataaaacatgtttttgattc-ccttatttaaaaagtcaacaaattttttggtccccctccccct 389  Q
    |||| |||||||||||||| ||   |||| || ||||||||||||||||||||||| |||||||||||    
T  45428641 ttttctaaaacatgttttttatcatcctttttaaaaaagtcaacaaattttttggttcccctccccct 45428574  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 45427551 - 45427584
Alignment:
Q  351 atttaaaaagtcaacaaattttttggtccccctc 384  Q
    ||||||||||||||||||| ||||||||||||||    
T  45427551 atttaaaaagtcaacaaatcttttggtccccctc 45427584  T

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