View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14501_high_3 (Length: 562)
Name: NF14501_high_3
Description: NF14501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14501_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Original strand, 21384041 - 21384568
Alignment:
| Q |
19 |
gcattgatagcagcattcttgtcttggatgatatgatgctatacaaacactataatttagaatgaaaaacaatataactatataatttagaaatacaacg |
118 |
Q |
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| T |
21384041 |
gcattgatagcagcattcttgtcttggatgatatgatgctatacaaacactataatttagaatgaaaaacaatataactatataatttagaaatgcaacg |
21384140 |
T |
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| Q |
119 |
aaattatttaaaccacgacatatatgtcacattctctttgatagtaactactaacccatcattacatgcagaatatttcataatgccgtccttatattac |
218 |
Q |
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| T |
21384141 |
aaattatttaaaccacgacatatatgtcacattctctttgatagtaactactaatccatcattacatgcagaatatttcataatgccgtccttgtattac |
21384240 |
T |
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| Q |
219 |
cataattaggattaaatatatcatgtgggatgttgcattatttcattatca-nnnnnnncaataaaaatattcatatttatgacaacgtgttctataaaa |
317 |
Q |
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| T |
21384241 |
cataattaggattaaatatatcatgtgggatgttgcattatttcattatcattttttttcaat--atatattcatatttatgacaacctgttctataaaa |
21384338 |
T |
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| Q |
318 |
tttcgttgtttttgtatcaacaaataaagaaaaattaaagtttgaattaaacacggttcnnnnnnngaaagtgatttgtaatggttacattcttaccgac |
417 |
Q |
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| T |
21384339 |
tttcgttgtttttgtatcaacaaataaagaaaaattgaagtttgaattaaacacggttctttttttgaaagtgatttgtaatggttacattcttaccgac |
21384438 |
T |
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| Q |
418 |
atgaatggttttaattctaatttgcacaatgtgacaaatattttgccccatgcaccttttcccaaccttagataaattggatacacgaataaaattgcat |
517 |
Q |
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| T |
21384439 |
atgaatggttttaattctaatttgcacaaagtgacaaatatgttgccccatgcaccttatctcaaccttaggtaatttggacacacgaataaaattgcat |
21384538 |
T |
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| Q |
518 |
cattttatcttaacgcaatattaattgtag |
547 |
Q |
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| T |
21384539 |
cattttatcttaacgcaatattaattgtag |
21384568 |
T |
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