View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14501_low_11 (Length: 262)

Name: NF14501_low_11
Description: NF14501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14501_low_11
NF14501_low_11
[»] chr4 (2 HSPs)
chr4 (13-262)||(24216123-24216372)
chr4 (71-249)||(16841323-16841501)
[»] chr5 (14 HSPs)
chr5 (71-253)||(37698327-37698509)
chr5 (58-234)||(37391372-37391548)
chr5 (35-235)||(37534652-37534853)
chr5 (71-240)||(37641428-37641597)
chr5 (71-241)||(37595876-37596049)
chr5 (83-242)||(37704213-37704372)
chr5 (58-241)||(37713170-37713353)
chr5 (71-225)||(37411750-37411904)
chr5 (71-241)||(37437247-37437417)
chr5 (113-234)||(37399289-37399410)
chr5 (110-234)||(37380806-37380930)
chr5 (111-254)||(37430290-37430433)
chr5 (35-248)||(37441485-37441689)
chr5 (121-240)||(37825460-37825579)
[»] chr3 (1 HSPs)
chr3 (35-231)||(14554615-14554809)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 24216123 - 24216372
Alignment:
Q  13 ccaaaatcatcaagtnnnnnnngaaagaatattgagaagagagtgtaagtgttggttactctatatgggttccttttttattctaatgcctcatttgacc 112  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24216123 ccaaaatcatcaagtaaaaaaagaaagaatattgagaagagagtgtaagtgttggttactctatatgggttccttttttattctaatgcctcatttgacc 24216222  T
Q  113 tttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaact 212  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24216223 tttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaact 24216322  T
Q  213 catttgttgtcaacacttcatctgaacccgatatttggtctctgcgttcc 262  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  24216323 catttgttgtcaacacttcatctgaacccgatatttggtctatgtgttcc 24216372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 249
Target Start/End: Original strand, 16841323 - 16841501
Alignment:
Q  71 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 170  Q
    ||||| ||||| |||||||||||| |  |||||  |||  || |||||| |||| |  ||||| |||||||||| ||||||||  ||||||  |||||||    
T  16841323 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 16841422  T
Q  171 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttg 249  Q
    ||||||| |||||||| ||||| |||||||| ||||| |||||||||  |||||||||||||||| |||  ||||||||    
T  16841423 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttgatatttg 16841501  T

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Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 37698509 - 37698327
Alignment:
Q  71 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 170  Q
    ||||| ||||| ||||||||||||||| ||||| ||||  |||||||||  ||| ||||| |||||||||||||||||||||| |||||   |||||| |    
T  37698509 ctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattat 37698410  T
Q  171 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtct 253  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||   || |||||||| ||| |||| ||||||||||||    
T  37698409 gcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtct 37698327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 37391372 - 37391548
Alignment:
Q  58 taagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttac 157  Q
    |||||||  ||| ||||| ||||| ||||| |||||| || ||||| |||| |||||||||| |||||||||| |||||||||||||||||||||| ||     
T  37391372 taagtgtaagttgctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctat 37391471  T
Q  158 acttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 234  Q
    |||  |||||| ||||||| |||||| || ||||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  37391472 actctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatc 37391548  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 235
Target Start/End: Complemental strand, 37534853 - 37534652
Alignment:
Q  35 gaaagaatattgagaagagagtgt-aagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctg 133  Q
    |||| |||| |||||||||||| | ||||||  ||| ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  ||| ||||| ||    
T  37534853 gaaataatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttg 37534754  T
Q  134 ttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcat 233  Q
    ||| |||||||||||||||| ||||||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  ||||| ||||||||    
T  37534753 ttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcat 37534654  T
Q  234 ct 235  Q
    ||    
T  37534653 ct 37534652  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 37641597 - 37641428
Alignment:
Q  71 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 170  Q
    ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  ||  ||||| ||||| |||||||||||||||| ||||||| |||| | |    
T  37641597 ctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgt 37641498  T
Q  171 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacc 240  Q
    ||||||| |||||||  ||||| |||||||||||||| ||||| |||  |||||||||||||||| ||||    
T  37641497 gcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaacc 37641428  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 37596049 - 37595876
Alignment:
Q  71 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgct---tactcattttacttcttacacttactcat 167  Q
    ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  ||| ||||| |||||||   ||||||||||||||| ||||||| |||||    
T  37596049 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcat 37595950  T
Q  168 tctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaaccc 241  Q
    | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |||||||||||||||| |||||    
T  37595949 tgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaaccc 37595876  T

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Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 37704372 - 37704213
Alignment:
Q  83 tccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatg 182  Q
    ||||||||||||||| ||||| |||| || ||||||| |||| ||||  || ||||||||||||||||||| ||||||| |||||| |||| ||| ||||    
T  37704372 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 37704273  T
Q  183 acagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccg 242  Q
    | || || || ||||||||||||||  ||||||||  |||||||||||||||| ||||||    
T  37704272 atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccg 37704213  T

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Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 37713353 - 37713170
Alignment:
Q  58 taagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttac 157  Q
    |||||||  ||| ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  |||  |||| ||||||||||||||||||||||  ||    
T  37713353 taagtgtaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccac 37713254  T
Q  158 acttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaaccc 241  Q
    |||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |||||||||||||||| |||||    
T  37713253 actttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaaccc 37713170  T

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Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 37411750 - 37411904
Alignment:
Q  71 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 170  Q
    ||||| ||||| |||| |||| ||||| || |  |||| |||||||||| |||| |||||||| || |||||||||||||||| ||||| | |||||| |    
T  37411750 ctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattat 37411849  T
Q  171 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 225  Q
    ||||| |||||||||| | ||| ||||||||||||||||||| | || |||||||    
T  37411850 gcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaa 37411904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 37437417 - 37437247
Alignment:
Q  71 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 170  Q
    ||||| ||||| ||||||||||||||  |||||  |||  || |||||| ||||  |||| ||||||||||||| |||||| |  |||||| |||||| |    
T  37437417 ctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattat 37437318  T
Q  171 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaaccc 241  Q
    |||||||||||||||  ||||| || ||||||||||| ||||| ||| || |||||||||||||| |||||    
T  37437317 gcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaaccc 37437247  T

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Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 37399289 - 37399410
Alignment:
Q  113 tttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaact 212  Q
    ||||||| |||| ||||| ||||| |||||||||||||||| ||||||| |||| | ||||||||||||||||  ||||| |||||||||||||| || |    
T  37399289 tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaatt 37399388  T
Q  213 catttgttgtcaacacttcatc 234  Q
    ||||| ||||  ||||||||||    
T  37399389 cattttttgttgacacttcatc 37399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 37380806 - 37380930
Alignment:
Q  110 acctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaaga 209  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||  |||||| |||||| |||||||| ||||| |  ||||| |||||||| ||||| |    
T  37380806 acctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaa 37380905  T
Q  210 actcatttgttgtcaacacttcatc 234  Q
    ||||||||  | |||||||||||||    
T  37380906 actcattttctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 37430433 - 37430290
Alignment:
Q  111 cctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaa 210  Q
    ||||||||| |||| ||||| || |||| |||| ||||||||| || || |  ||| | ||||| ||||||||||||||||| |||||||||||||||||    
T  37430433 cctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattcaagaa 37430334  T
Q  211 ctcatttgttgtcaacacttcatctgaacccgatatttggtctc 254  Q
     |||||| || |||||||||||||| |||| | | |||||||||    
T  37430333 ttcattttttatcaacacttcatctcaacctggtttttggtctc 37430290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 37441689 - 37441485
Alignment:
Q  35 gaaagaatattgagaagagagtgtaagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgt 134  Q
    |||||||||||||||||| ||||||||| |      ||||| |||||| ||||||||||| || ||||| |||| |||||||||  |||| | ||| ||     
T  37441689 gaaagaatattgagaagaaagtgtaagtat------ctctaaatgggt-ccttttttattttattgccttattttacctttcacatgttcttcttgttgc 37441597  T
Q  135 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 234  Q
    ||||||||||||||||||| || |||| |||| | || ||| | |||||||  ||||| |||||||||||||| |||||  ||   ||||||||||||||    
T  37441596 tgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatc 37441499  T
Q  235 tgaacccgatattt 248  Q
      ||||||||||||    
T  37441498 gaaacccgatattt 37441485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 37825579 - 37825460
Alignment:
Q  121 gttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgtt 220  Q
    |||| ||||| ||||| |||||||||||||||| ||||||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |    
T  37825579 gttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttct 37825480  T
Q  221 gtcaacacttcatctgaacc 240  Q
    ||||||||||||||| ||||    
T  37825479 gtcaacacttcatctaaacc 37825460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 14554809 - 14554615
Alignment:
Q  35 gaaagaatattgagaagagagtgt-aagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctg 133  Q
    ||||||||| |||||||||||| | ||||||  ||| ||||| ||||| ||||||||||||||| ||||| |||| ||||||||||  ||| | |||       
T  14554809 gaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttcttattg--- 14554713  T
Q  134 ttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttc 231  Q
    |||||||||||||||||||| || |||| |||||| |||||||| |||||||  ||||| |||||||||||||| ||||| |||  ||||||||||||    
T  14554712 ttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttc 14554615  T

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