View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14501_low_12 (Length: 251)
Name: NF14501_low_12
Description: NF14501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14501_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 24731183 - 24730951
Alignment:
| Q |
2 |
tgttaaatggatttccccaacccatttttgttttagctttggaaacaccaagacctagaggaagcatataaatcatcactccaggatctgttcctctttg |
101 |
Q |
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| T |
24731183 |
tgttaaatggatttccccaacccttgtcagttttagctttggaaacaccaagacctagaggaagcatataaatcatcactccaggatctgttcctctttg |
24731084 |
T |
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| Q |
102 |
aatactgagtacaccattcgttaaggcacgttcataataatctgcgtatgagacttctttcgtccatctaaacaggtgccgcgaaacctgaaaatcattt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24731083 |
aatactgagtacaccattcgttaaggcacgttcataataatctgcgtacgagacttctttcgtccatctaaacaggtgccgcgaaacctgaaaatcattt |
24730984 |
T |
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| Q |
202 |
tcttgaaacataaatatttcaacaaaataaact |
234 |
Q |
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||||| |||||||||||||||||| |||||||| |
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| T |
24730983 |
tcttgcaacataaatatttcaacagaataaact |
24730951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 24722670 - 24722473
Alignment:
| Q |
37 |
gctttggaaacaccaagacctagaggaagcatataaatcatcactccaggatctgttcctctttgaatactgagtacaccattcgttaaggcacgttcat |
136 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
24722670 |
gctttggaaacaccaaggccgagaggaagcatataaatcatcactccaggatctgttcctctttgaatgctgagtacaccattcgttaaggcacgctcat |
24722571 |
T |
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| Q |
137 |
aataatctgcgtatgagacttctttcgtccatctaaacaggtgccgcgaaacctgaaaatcattttcttgaaacataaatatttcaaca-aaataaact |
234 |
Q |
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| T |
24722570 |
aataatctgcgtaagtgacttctttggtccatctgaacaggtgccgcgaaacctg-aaatcattatctttcaacataaatacttcaacagaaataaact |
24722473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 24691913 - 24691728
Alignment:
| Q |
31 |
gttttagctttggaaacaccaagacctagaggaagcatataaatcatcactccaggatctgttcctctttgaatactgagtacaccattcgttaaggcac |
130 |
Q |
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||||||||||| ||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
24691913 |
gttttagctttcgaaaccccaatacctaaaggaagcatataaatcatcacaccaggatctgttcctctttgaattccgagtacaccattcgttaaggcac |
24691814 |
T |
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| Q |
131 |
gttcataataatctgcgtatgagacttctttcgtccatctaaacaggtgccgcgaaacctgaaaatcattttcttgaaacataaata |
217 |
Q |
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| T |
24691813 |
gctcataataatctgcataagtgacttctttggtccatctgaacaggtgccgtgaaacctg-aaatcattatctggcaacataaata |
24691728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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