View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14501_low_5 (Length: 439)
Name: NF14501_low_5
Description: NF14501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14501_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 31009694 - 31010103
Alignment:
| Q |
19 |
atttggctcctttgagtatatttgctgatgttgttgatcttggagctatgggagttgtaatggttgaggatgtttttgtctttttggaaaataggccacc |
118 |
Q |
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| T |
31009694 |
atttggctcctttgagtatatttgctgatgttgttgatcttggagctatgggagttgtaatggttgaggatgtttttgtctttttggaaaataggccacc |
31009793 |
T |
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| Q |
119 |
tttgaagacttttggtggtttatctgnnnnnnnatatggtttaggtgtggctgtttattcttttgaaggaataggaatggttttgcctttggaatcagaa |
218 |
Q |
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| T |
31009794 |
tttgaagacttttggtggtttatctgtttttctatatggtttaggtgtggctgtttattcttttgaaggaataggaatggttttgcctttggaatcagaa |
31009893 |
T |
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| Q |
219 |
gcaaaagataaagataaatttggtggagttttgggtttgggaatgtttctaatttttctgttgtatggaggttttgctactttaggttactttgcttttg |
318 |
Q |
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| T |
31009894 |
gcaaaagataaagataaatttggtggagttttgggtttgggaatgttcctaatttttctattgtatggaggttttgctactttaggttactttgcttttg |
31009993 |
T |
|
| Q |
319 |
gtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttggttcaattaggtctttgtgtcaatctctttttcacctttcc |
418 |
Q |
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| T |
31009994 |
gtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttggtacaattaggtctttgtgtcaatctctttttcacctttcc |
31010093 |
T |
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| Q |
419 |
tttgatgatg |
428 |
Q |
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| T |
31010094 |
tttgatgatg |
31010103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 9782853 - 9782794
Alignment:
| Q |
153 |
tatggtttaggtgtggctgtttattcttttgaaggaataggaatggttttgcctttggaa |
212 |
Q |
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| T |
9782853 |
tatggtattggtgtagctgtttatgcttttgaagggattggaatggttttgcctttggaa |
9782794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 9782979 - 9782909
Alignment:
| Q |
27 |
cctttgagtatatttgctgatgttgttgatcttggagctatgggagttgtaatggttgaggatgtttttgt |
97 |
Q |
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| T |
9782979 |
cctttgagtatttttgctgatgttgttgatatttctgctaagagtgttgttatggttgaagatgtttttgt |
9782909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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