View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14501_low_8 (Length: 305)

Name: NF14501_low_8
Description: NF14501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14501_low_8
NF14501_low_8
[»] chr8 (3 HSPs)
chr8 (1-147)||(25893260-25893403)
chr8 (244-288)||(25893167-25893211)
chr8 (151-181)||(25893210-25893240)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 25893403 - 25893260
Alignment:
Q  1 taaacaaattcatttctaaacaaattcgtcnnnnnnnccaaataaaagttggaaaatgttggtccaccaacacttcaagtcagaaacaatcactcatgat 100  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25893403 taaacaaattcatttctaaacaaattcgtcaaaaaaaccaaataaaagttggaaaatgttggtccaccaacacttcaagtcagaaacaatcactcgtgat 25893304  T
Q  101 cttcatgtatcaaatgatgacgatatgtaccccagtcacgtgcaaaa 147  Q
    |||||||||||||   ||||||||||||| |||||||||||||||||    
T  25893303 cttcatgtatcaa---atgacgatatgtaacccagtcacgtgcaaaa 25893260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 25893211 - 25893167
Alignment:
Q  244 gagctacgaaaatatctctattttagcccatatgaatattagaag 288  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  25893211 gagctacgaaaatatctctattttagctcatatgaatattagaag 25893167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 181
Target Start/End: Complemental strand, 25893240 - 25893210
Alignment:
Q  151 aggcaccgttcttaaggatatatttgcccga 181  Q
    |||||||||||||||||||||||||||||||    
T  25893240 aggcaccgttcttaaggatatatttgcccga 25893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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