View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14502_high_9 (Length: 250)

Name: NF14502_high_9
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14502_high_9
NF14502_high_9
[»] chr7 (2 HSPs)
chr7 (6-134)||(48845978-48846106)
chr7 (134-246)||(48846135-48846244)
[»] chr6 (2 HSPs)
chr6 (22-134)||(7016419-7016531)
chr6 (134-246)||(7016274-7016383)
[»] chr1 (1 HSPs)
chr1 (22-109)||(17725703-17725790)
[»] chr2 (3 HSPs)
chr2 (22-105)||(35376356-35376439)
chr2 (154-232)||(35378151-35378226)
chr2 (106-134)||(35376532-35376560)
[»] chr4 (3 HSPs)
chr4 (22-102)||(31044633-31044713)
chr4 (154-228)||(31042663-31042734)
chr4 (174-232)||(42995566-42995621)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 48845978 - 48846106
Alignment:
Q  6 agtgctctctccaagactccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataat 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  48845978 agtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtattctttgatcacttgaggcttctcattgataat 48846077  T
Q  106 ttgagcaagttgtgcctgagtaagcttct 134  Q
    |||||||||||||||||||||||||||||    
T  48846078 ttgagcaagttgtgcctgagtaagcttct 48846106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 48846135 - 48846244
Alignment:
Q  134 tcagttgggaccagatcattagctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaa 233  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||    
T  48846135 tcagttgggacccaatcattagctaaattctctgtatcctcatcaagcctcttagtgttcaatgaag---tgctgctagaggaagctttgtttgtcgcaa 48846231  T
Q  234 catcatattcttc 246  Q
    |||||| ||||||    
T  48846232 catcattttcttc 48846244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 7016531 - 7016419
Alignment:
Q  22 ctccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataatttgagcaagttgtgcc 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  7016531 ctccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcctggatcacttgaggcttctcactgataatttgagcaagttgtgcc 7016432  T
Q  122 tgagtaagcttct 134  Q
    |||||||||||||    
T  7016431 tgagtaagcttct 7016419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 7016383 - 7016274
Alignment:
Q  134 tcagttgggaccagatcattagctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaa 233  Q
    |||||||||||| |||||||| ||||||||||| |||   ||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||    
T  7016383 tcagttgggacctgatcattaactaaattctctatatattcatcaagcctcttagtgttcaatgaag---tgctgctagaggaagctttgtttgtcgcaa 7016287  T
Q  234 catcatattcttc 246  Q
    |||||| ||||||    
T  7016286 catcattttcttc 7016274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 17725703 - 17725790
Alignment:
Q  22 ctccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataatttga 109  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17725703 ctccaacttgccaattatatgctgatttggaatggctttccccgactcgtactcgtggatcacttgaggcttctcattgataatttga 17725790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 35376356 - 35376439
Alignment:
Q  22 ctccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataat 105  Q
    |||||||||||||||||||   |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  35376356 ctccaacttgccaattatctgctgatttggaatggctttccccgactcatactcctggataacttgaggcttctcattgataat 35376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 35378151 - 35378226
Alignment:
Q  154 agctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgca 232  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||   |||||||||||| ||||||||||||||||    
T  35378151 agctaaattctctgtatcctcatcaagcctcttagtgttcaatgaag---tgctgctagaggcagctttgtttgtcgca 35378226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 35376532 - 35376560
Alignment:
Q  106 ttgagcaagttgtgcctgagtaagcttct 134  Q
    |||||||||||||||||||||||||||||    
T  35376532 ttgagcaagttgtgcctgagtaagcttct 35376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 31044713 - 31044633
Alignment:
Q  22 ctccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgat 102  Q
    ||||||||||| |||||||   || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  31044713 ctccaacttgctaattatctgctggtttggaatggctttccctgactcatactcttggatcacttgaggcttctcattgat 31044633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 31042734 - 31042663
Alignment:
Q  154 agctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgt 228  Q
    ||||| |||||| |||||| | || |||||||||||||| |||||||   |||||||||| | ||||||||||||    
T  31042734 agctagattctcagtatcctcgtccagcctcttagtgttcaatgaag---tgctgctagatgcagctttgtttgt 31042663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 42995566 - 42995621
Alignment:
Q  174 catcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgca 232  Q
    ||||||||||||||||||| |||||||   |||||||||| | |||||||| |||||||    
T  42995566 catcaagcctcttagtgtttaatgaag---tgctgctagaagcagctttgtctgtcgca 42995621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University