View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14502_low_1 (Length: 464)
Name: NF14502_low_1
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14502_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 2405319 - 2405774
Alignment:
| Q |
9 |
gacatcatcattgaccttagcataaaactcagcatcccagttgtccacagcataaatgaagaacgactttgtcttttttgcactctcttcaactgcctct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2405319 |
gacatcatcattgaccttagcataaaactcagcatcccagttgtccacagcataaatgaagaacgactttgtcttttttgcactctcttcaactgcctct |
2405418 |
T |
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| Q |
109 |
acttgatcatcctgtgaagaaaataataaagctaatgatgctaagatattagcttgtgatagaactcaagaacgaagaaaaaactgaattgtatcataac |
208 |
Q |
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| T |
2405419 |
acttgatcatcctgtgaagaaaataataaagctaatgatgctaggatattagcttgtgatagaactcaagaacgaagaaaaaactgaattgtatcataac |
2405518 |
T |
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| Q |
209 |
tggatcaaattaaacaagggataaattccaatatacaaacagtggcagcaactgtgaaataaaccgattatggttatggatgatgtgaactccttacagc |
308 |
Q |
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| T |
2405519 |
tggatcaatttaaacaagggataaattccaatatacaaacagtggcagcaactgtgaaataaaccgattatggttatggatgatgtgaactccttacagc |
2405618 |
T |
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| Q |
309 |
aatgaagaaaaatagaaaataccgagacctagtgttacccctttcctgaggaagaaacctttcttcacacaatctggcctacccacttccttcaaatgta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2405619 |
aatgaagaaaaatagaaaataccgagacctagtgttacccctttcctgaggaagaaacctttcttcacacaatctggcctacccacttccttcaaatgta |
2405718 |
T |
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| Q |
409 |
agaaaccctcattcagttaccactccttcccatataaccctctctctcctcatttt |
464 |
Q |
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| T |
2405719 |
agaaaccctcattcagttacaactccttcccatataaccctctctctcctcatttt |
2405774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 41117533 - 41117496
Alignment:
| Q |
10 |
acatcatcattgaccttagcataaaactcagcatccca |
47 |
Q |
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| T |
41117533 |
acatcatcattgactttagcataaaactccgcatccca |
41117496 |
T |
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