View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14502_low_11 (Length: 283)
Name: NF14502_low_11
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14502_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 42213899 - 42213666
Alignment:
| Q |
36 |
ggagttgaagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttgttccgtcaaaat |
135 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42213899 |
ggagttgaagggttctcagatatcattgaatctgagagccatccattgtcttcctcgtcaagacttagcaaagagtgcccgtaacttgttccgtcaaaat |
42213800 |
T |
|
| Q |
136 |
ctgaaatctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42213799 |
ctgaaatctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacagaagttgc |
42213700 |
T |
|
| Q |
236 |
atcattgatattatctgttctttcatttggaatg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42213699 |
atcattgatattatctgttctttcatttggaatg |
42213666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 42207088 - 42206833
Alignment:
| Q |
17 |
atcaccaatgaagcataggggagttgaagggttctcagatgtcattgaatctg---agagccatccattgtcttcctcgtcaagatttagcaaagagtgc |
113 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||| ||||||| |||||||||||||| ||| ||| || |||||||||| |||||| |||||||||||||| |
|
|
| T |
42207088 |
atcaccaatgtagcttagaggagttgaaggattctcaggtgtcattgaatctgctgagacccaatcaatgtcttcctcttcaagacttagcaaagagtgc |
42206989 |
T |
|
| Q |
114 |
cagtaacttgttccgtcaaaatctgaaatctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaa |
213 |
Q |
| |
|
| |||||| |||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
42206988 |
cggtaactagttctatcaaaatctgaaatctcggagaaaacgtcataataggtggatgaacaagtactatggggagaccctgagccctcagagtagctaa |
42206889 |
T |
|
| Q |
214 |
gtgcatcatctacagaagttgcatcattgatattatctgttctttcatttggaatg |
269 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42206888 |
gtgcatcatctacagcagttgcatcattgatattatctcttctttcatttggaatg |
42206833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 42214295 - 42214214
Alignment:
| Q |
42 |
gaagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccagtaacttg |
123 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| || ||||||||| |||||| |||| ||||| ||| ||||||||| |
|
|
| T |
42214295 |
gaagggtcctcagagatcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttg |
42214214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 42214119 - 42214013
Alignment:
| Q |
17 |
atcaccaatgaagcataggggagttgaagggttctcagatgtcattgaatctgagagccatccattgtcttcctcgtcaagatttagcaaagagtgccag |
116 |
Q |
| |
|
||||||| || ||| ||| ||| | ||||| ||||||||| |||||||||||| |||||| || ||||||||| |||||| |||| ||||| ||| || |
|
|
| T |
42214119 |
atcaccattgtagcttagaggactagaaggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgag |
42214020 |
T |
|
| Q |
117 |
taacttg |
123 |
Q |
| |
|
||||||| |
|
|
| T |
42214019 |
taacttg |
42214013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University