View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14502_low_2 (Length: 454)
Name: NF14502_low_2
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14502_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 68 - 448
Target Start/End: Original strand, 43386290 - 43386668
Alignment:
| Q |
68 |
aataatgcaaaagtgccattatttacgggggactagctacctagcaagtgggatcgatgctgatcttacatatacatacactcatatatgtttatagaga |
167 |
Q |
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| T |
43386290 |
aataatgcaaaagtgccattatttacgggggactagctacctagcaagtgggatcgatgctgatcttacatatacatatactcatatatgtttatagaga |
43386389 |
T |
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| Q |
168 |
aagaataattaattgtcttaactgcagcaaattgaaacatcaacttgctactacttttctctcgattccaggacaaacaaatggaaaccacacatatata |
267 |
Q |
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| T |
43386390 |
aagaataattaattgtcttaaccgcagcaaattgaaacatcaacttgctactacttttctctcgattccaggacaaacaaatggaaaccacacatatata |
43386489 |
T |
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| Q |
268 |
cgctagctcaacaagtagggtttatttaatggtacaccatttagtttgtttgctaattaagcacacaataaatgcatacatacatatatgattgtgattt |
367 |
Q |
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| T |
43386490 |
cgctagctcaacaagtagggtttatttaattgtacaccatttaatttgtttgctaattaagcacacaagaaatgcatacatacatatatgattgtgattt |
43386589 |
T |
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| Q |
368 |
atatatacgtccattaataccatatacagtttataattatgacacaagagtccatatgtcccccctccatcaactagtata |
448 |
Q |
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| T |
43386590 |
atatatacgtccattaaaaccatatacagtttataattatgacacaagagtcc--atgtcccccctccatcaactagtata |
43386668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 50122943 - 50122978
Alignment:
| Q |
252 |
aaaccacacatatatacgctagctcaacaagtaggg |
287 |
Q |
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| T |
50122943 |
aaaccacacatatatacgctagctcaacaagtaggg |
50122978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 287
Target Start/End: Complemental strand, 31951435 - 31951404
Alignment:
| Q |
256 |
cacacatatatacgctagctcaacaagtaggg |
287 |
Q |
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| T |
31951435 |
cacacatatatacgctagctcaacaagtaggg |
31951404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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