View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14502_low_3 (Length: 448)

Name: NF14502_low_3
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14502_low_3
NF14502_low_3
[»] chr6 (5 HSPs)
chr6 (221-376)||(28961159-28961315)
chr6 (4-191)||(28960970-28961159)
chr6 (291-376)||(29000924-29001009)
chr6 (396-430)||(28961304-28961338)
chr6 (25-82)||(965027-965084)
[»] chr8 (2 HSPs)
chr8 (25-82)||(12820671-12820728)
chr8 (25-101)||(27805371-27805447)
[»] scaffold0884 (1 HSPs)
scaffold0884 (25-82)||(4319-4376)
[»] chr7 (2 HSPs)
chr7 (25-82)||(1636722-1636779)
chr7 (25-82)||(44672817-44672874)
[»] chr5 (1 HSPs)
chr5 (25-82)||(22036126-22036183)
[»] chr4 (1 HSPs)
chr4 (25-82)||(54900045-54900102)
[»] chr3 (1 HSPs)
chr3 (25-82)||(10557832-10557889)
[»] chr2 (2 HSPs)
chr2 (25-82)||(35077184-35077241)
chr2 (25-82)||(35080442-35080499)
[»] chr1 (3 HSPs)
chr1 (25-82)||(25662880-25662937)
chr1 (25-82)||(28138633-28138690)
chr1 (25-82)||(28141883-28141940)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 221 - 376
Target Start/End: Original strand, 28961159 - 28961315
Alignment:
Q  221 aagcaaaacataaaatggaaaatgtaatcaataggtgattaatattaattcattcatnnnnnnn-ggtaagttcttcattaaaatccccatctgagggag 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  28961159 aagcaaaacataaaatggaaaatgtaatcaataggtgattaatattaattcattcataaaaaaatggtaagttcttcattaaaatccccatctgagggag 28961258  T
Q  320 tcttcttgacccatgtggtcctctctatactccataaaccacccacccttcccaata 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28961259 tcttcttgacccatgtggtcctctctatactccataaaccacccacccttcccaata 28961315  T

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Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 28960970 - 28961159
Alignment:
Q  4 ttaatattaacgacgttgcatagtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgatacaattttattatacttgctnn 103  Q
    |||||| ||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |      
T  28960970 ttaataataatgacattgtatagtagaaattgaaacaatccatgtgaaaagaaattttataaattttattatttcgatacaattttagtatacttgttaa 28961069  T
Q  104 nnnnntc--tgagtacaattctagtaatctaatatttttcaatgattaaaattttatttttatttcacttgagtgatagataggtcacaa 191  Q
         ||  | ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28961070 aaaaatctatcagtacaattctagtaatgtaatatttttcaatgattaaaatgttatttttatttcacttgagtgatagataggtcacaa 28961159  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 291 - 376
Target Start/End: Original strand, 29000924 - 29001009
Alignment:
Q  291 ttcttcattaaaatccccatctgagggagtcttcttgacccatgtggtcctctctatactccataaaccacccacccttcccaata 376  Q
    ||||||||| |||||||||  |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  29000924 ttcttcattcaaatccccacttgagggagtcttcttgactcatgtggtcctctctatactctataaaccacccacccttcccaata 29001009  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 28961304 - 28961338
Alignment:
Q  396 cccttcccaatatttatggaatttatgttaactct 430  Q
    |||||||||||||||||||||||||||||||||||    
T  28961304 cccttcccaatatttatggaatttatgttaactct 28961338  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 965027 - 965084
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||||| |  ||||||||||||||||||| |||||||    
T  965027 agtagaagttgaaacagtccctgtgaatacgaattttataaattttattacttcgata 965084  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 12820728 - 12820671
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||||||||||||||||||||| | |  || |||||||||||||||| |||||||    
T  12820728 agtagaaattgaaacagtccatgtggatacgaactttataaattttattacttcgata 12820671  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 27805447 - 27805371
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgatacaattttattatacttgct 101  Q
    |||||||||||||||| ||| |||||| |  ||| |||||||||||||||||| ||| || ||||| || |||||||    
T  27805447 agtagaaattgaaacaatccctgtgaagacgaatcttataaattttattattttgatgcatttttagtacacttgct 27805371  T

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Target: scaffold0884 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 4376 - 4319
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||||| |  ||| ||||||||||||||| |||||||    
T  4376 agtagaagttgaaacagtccctgtgaatacgaatcttataaattttattacttcgata 4319  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 1636779 - 1636722
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  1636779 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 1636722  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 44672874 - 44672817
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  44672874 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 44672817  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 22036126 - 22036183
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  22036126 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 22036183  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 54900045 - 54900102
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| ||||||||||||||||| | |  ||| ||||||||||||||| |||||||    
T  54900045 agtagaagttgaaacagtccatgtggatacgaatcttataaattttattacttcgata 54900102  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 10557889 - 10557832
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  10557889 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 10557832  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 35077184 - 35077241
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  35077184 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 35077241  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 35080442 - 35080499
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  35080442 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 35080499  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 25662937 - 25662880
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| ||||||||||||||||| | |  ||| ||||||||||||||| |||||||    
T  25662937 agtagaagttgaaacagtccatgtggatacgaatcttataaattttattacttcgata 25662880  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 28138690 - 28138633
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  28138690 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 28138633  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 28141940 - 28141883
Alignment:
Q  25 agtagaaattgaaacagtccatgtgaaaagaaattttataaattttattatttcgata 82  Q
    ||||||| |||||||||||| |||| |||  ||| ||||||||||||||| |||||||    
T  28141940 agtagaagttgaaacagtccctgtggaaacgaatcttataaattttattacttcgata 28141883  T

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