View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14502_low_5 (Length: 402)
Name: NF14502_low_5
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14502_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 39586460 - 39586830
Alignment:
| Q |
18 |
aaatccttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586460 |
aaatccttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaac |
39586559 |
T |
|
| Q |
118 |
ttgctctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586560 |
ttgctctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaac |
39586659 |
T |
|
| Q |
218 |
tcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586660 |
tcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatg |
39586759 |
T |
|
| Q |
318 |
caaccattttccacaggaaagcagaaaacgattcaagttttgagcgcttaacgcttccactattatctgtg |
388 |
Q |
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| T |
39586760 |
caaccattttccacaagaaagcagaaaacgattcaagttttgagcgcttaacgcttccactattatttgtg |
39586830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 39553353 - 39553701
Alignment:
| Q |
18 |
aaatccttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaac |
117 |
Q |
| |
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| T |
39553353 |
aaatcctagccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaac |
39553452 |
T |
|
| Q |
118 |
ttgctctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaac |
217 |
Q |
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| T |
39553453 |
tcgatcagccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagc |
39553552 |
T |
|
| Q |
218 |
tcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatg |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||| ||| | |
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| T |
39553553 |
tcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcgg |
39553652 |
T |
|
| Q |
318 |
caaccattttccacaggaaagcagaaaacgattcaagttttgagcgctt |
366 |
Q |
| |
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||||||||||||||| |||||||||||| || || |||||||||||||| |
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|
| T |
39553653 |
caaccattttccacaagaaagcagaaaaggactcgagttttgagcgctt |
39553701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 39543334 - 39543679
Alignment:
| Q |
18 |
aaatccttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaac |
117 |
Q |
| |
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||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || || || | || |||||| |||||||||||| |
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| T |
39543334 |
aaatcctagccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaac |
39543433 |
T |
|
| Q |
118 |
ttgctctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaac |
217 |
Q |
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| | || | ||||||||||| || || ||||| || |||||| |||||||| || ||||||| | |||||||||||||||||||| ||| |||||| | |
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| T |
39543434 |
tcgatcagccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagc |
39543533 |
T |
|
| Q |
218 |
tcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatg |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||| ||| | |
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| T |
39543534 |
tcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcgg |
39543633 |
T |
|
| Q |
318 |
caaccattttccacaggaaagcagaaaacgattcaagttttgagcg |
363 |
Q |
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||||||||||||||| |||||||||||| || || ||||||||||| |
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| T |
39543634 |
caaccattttccacaagaaagcagaaaaggactcgagttttgagcg |
39543679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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