View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14502_low_6 (Length: 378)

Name: NF14502_low_6
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14502_low_6
NF14502_low_6
[»] chr5 (5 HSPs)
chr5 (16-377)||(41886263-41886623)
chr5 (61-165)||(41900361-41900465)
chr5 (294-344)||(32268868-32268918)
chr5 (297-344)||(41900191-41900238)
chr5 (58-166)||(32268617-32268725)
[»] chr3 (2 HSPs)
chr3 (304-348)||(51120326-51120370)
chr3 (63-100)||(1657614-1657651)
[»] chr2 (1 HSPs)
chr2 (304-348)||(45244522-45244566)
[»] scaffold1155 (1 HSPs)
scaffold1155 (16-97)||(1821-1902)
[»] scaffold0345 (1 HSPs)
scaffold0345 (16-97)||(8314-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (16-97)||(30584-30665)
[»] chr8 (3 HSPs)
chr8 (58-107)||(17635581-17635630)
chr8 (58-87)||(17642880-17642909)
chr8 (304-344)||(17642614-17642654)
[»] chr7 (1 HSPs)
chr7 (307-344)||(10616209-10616246)
[»] chr6 (3 HSPs)
chr6 (58-107)||(9412203-9412252)
chr6 (63-100)||(11935970-11936007)
chr6 (63-100)||(11947950-11947987)
[»] chr4 (5 HSPs)
chr4 (63-100)||(645194-645231)
chr4 (304-344)||(1488824-1488864)
chr4 (304-344)||(1537251-1537291)
chr4 (64-124)||(1545952-1546012)
chr4 (304-344)||(12120920-12120960)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 41886623 - 41886263
Alignment:
Q  16 aaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactga 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41886623 aaaactcgcaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttgctga 41886524  T
Q  116 ggttaccacggaagctagaaaggtcgagagaggtgagattgatgaatctactgagtagacgaggaggaaaagggagggtttgactttgatcatagcagat 215  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  41886523 ggttaccgcggaagctagaaaggtcgagagaggtgagattgatgaatctactgagtagacgaggaggaaaagggaggg-ttgactttgatcacagcagat 41886425  T
Q  216 tgtgagagagaatctgatgcagttggtgatggacaagaattgtttcgagacaactgacaaagatgtcatgcaactatggttgtctttcaggaatttgaag 315  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886424 tgtgagagagaatctgatgcggttggtgatggacaagaattgtttcgagacaactgacaaagatgtcatgcaactatggttgtctttcaggaatttgaag 41886325  T
Q  316 acacattctcaacactcatcaggtaaatagaaaccaccaaccattgtttttcctttgcttct 377  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  41886324 acacattcccaacactcatcaggtaaatagaaaccaccaatcattgtttttcttttgcttct 41886263  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 41900465 - 41900361
Alignment:
Q  61 ttgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccacggaagctagaaaggtcgagagaggtgagattgatga 160  Q
    |||||||||||||||||||||||||||| ||||||||| |  ||||||||  |||||||||||  |||||  || || | ||| |||||||||||| | |    
T  41900465 ttgagtgatgtgagtttcaatggaaaatgagagatttgacaaagaagtttgttgaggttaccatagaagcgcgagagattgagggaggtgagattggtaa 41900366  T
Q  161 atcta 165  Q
    |||||    
T  41900365 atcta 41900361  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 32268868 - 32268918
Alignment:
Q  294 gttgtctttcaggaatttgaagacacattctcaacactcatcaggtaaata 344  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  32268868 gttgtctttcaagaatttgaagacacattcccaacactcatctggtaaata 32268918  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 41900238 - 41900191
Alignment:
Q  297 gtctttcaggaatttgaagacacattctcaacactcatcaggtaaata 344  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  41900238 gtctttgaggaatttgaagacacattcccaacactcatctggtaaata 41900191  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 32268617 - 32268725
Alignment:
Q  58 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccacggaagctagaaaggtcgagagaggtgagattga 157  Q
    ||||||||||| ||||||||||||||||||  ||||||||| | |||||| ||  |||| |||||   ||| |  || |||||||| |||||||| |||     
T  32268617 agattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagcttgttgagtttaccgttgaaacacgagaggtcgagggaggtgaggttgg 32268716  T
Q  158 tgaatctac 166  Q
    |||||||||    
T  32268717 tgaatctac 32268725  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 51120370 - 51120326
Alignment:
Q  304 aggaatttgaagacacattctcaacactcatcaggtaaatagaaa 348  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  51120370 aggaatttgaagacacattcccaacagtcatcaggtaaatagaaa 51120326  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 1657614 - 1657651
Alignment:
Q  63 gagtgatgtgagtttcaatggaaaattagagatttggc 100  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  1657614 gagtgatgtgagtctcaatggaaaactagagatttggc 1657651  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 45244566 - 45244522
Alignment:
Q  304 aggaatttgaagacacattctcaacactcatcaggtaaatagaaa 348  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  45244566 aggaatttcaagacacattcccaacactcatcaggtaaatagaaa 45244522  T

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Target: scaffold1155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 1902 - 1821
Alignment:
Q  16 aaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattagagattt 97  Q
    ||||||| |||||||| || |||||| ||  |||| || || ||||||||||||||||| |||||||| |||  ||||||||    
T  1902 aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt 1821  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 8314 - 8395
Alignment:
Q  16 aaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattagagattt 97  Q
    ||||||| |||||||| || |||||| ||  |||| || || ||||||||||||||||| |||||||| |||  ||||||||    
T  8314 aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt 8395  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 30665 - 30584
Alignment:
Q  16 aaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattagagattt 97  Q
    ||||||| |||||||| || |||||| ||  |||| || || ||||||||||||||||| |||||||| |||  ||||||||    
T  30665 aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt 30584  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 17635630 - 17635581
Alignment:
Q  58 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaag 107  Q
    |||||||||||| |||||||||||||||||  |||||||| || ||||||    
T  17635630 agattgagtgatatgagtttcaatggaaaaggagagatttcgcagagaag 17635581  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 17642909 - 17642880
Alignment:
Q  58 agattgagtgatgtgagtttcaatggaaaa 87  Q
    ||||||||||||||||||||||||||||||    
T  17642909 agattgagtgatgtgagtttcaatggaaaa 17642880  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 17642654 - 17642614
Alignment:
Q  304 aggaatttgaagacacattctcaacactcatcaggtaaata 344  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  17642654 aggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  307 aatttgaagacacattctcaacactcatcaggtaaata 344  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 9412203 - 9412252
Alignment:
Q  58 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaag 107  Q
    ||||| ||||||| ||||||||||||||||  ||||||||| ||||||||    
T  9412203 agattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaag 9412252  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 11936007 - 11935970
Alignment:
Q  63 gagtgatgtgagtttcaatggaaaattagagatttggc 100  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  11936007 gagtgatgtgagtctcaatggaaaactagagatttggc 11935970  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 11947987 - 11947950
Alignment:
Q  63 gagtgatgtgagtttcaatggaaaattagagatttggc 100  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  11947987 gagtgatgtgagtctcaatggaaaactagagatttggc 11947950  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 645194 - 645231
Alignment:
Q  63 gagtgatgtgagtttcaatggaaaattagagatttggc 100  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  645194 gagtgatgtgagtctcaatggaaaactagagatttggc 645231  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 1488864 - 1488824
Alignment:
Q  304 aggaatttgaagacacattctcaacactcatcaggtaaata 344  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  1488864 aggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 1537291 - 1537251
Alignment:
Q  304 aggaatttgaagacacattctcaacactcatcaggtaaata 344  Q
    |||||| |||| |||||||| ||||||||||||||||||||    
T  1537291 aggaatctgaatacacattcccaacactcatcaggtaaata 1537251  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 1545952 - 1546012
Alignment:
Q  64 agtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccac 124  Q
    |||| ||||||||||||||||||| |||||||||||  |||||| ||  |||||| |||||    
T  1545952 agtgttgtgagtttcaatggaaaagtagagatttggtagagaagcttgttgaggtcaccac 1546012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 12120960 - 12120920
Alignment:
Q  304 aggaatttgaagacacattctcaacactcatcaggtaaata 344  Q
    |||||| ||| ||||||||| ||||||||||||||||||||    
T  12120960 aggaatctgatgacacattcccaacactcatcaggtaaata 12120920  T

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