View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14502_low_8 (Length: 337)
Name: NF14502_low_8
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14502_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 31383540 - 31383851
Alignment:
| Q |
12 |
atcattattgagaaccacgaagcaaatcaagatccacgaaacaaacgccatcgacaatgagaattaccgacgccgtttgaaaacaaaccataataaacct |
111 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31383540 |
atcattattaaaaaccacgaagcaaatcaagatccacgaaacaaacgccatcgacaacgagaattaccgacgccgtttgaaaacaaaccataataaacct |
31383639 |
T |
|
| Q |
112 |
caatatattatattttgaagggaattttgaagaagatagattatttttctctttcaaattaagtataaattaaaaatgacatatcataatatattatttt |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31383640 |
caatatattatattttggagggaattttgaagaatatagattatttttctctttcaaattaagtataaattaaaaatgacatatcataatatattatttt |
31383739 |
T |
|
| Q |
212 |
cattttctttatggaaagcattttcaaaatatatttacatacatcaatatggtaaaaatttgttaac---atgatgattagagcatagtaattacatacc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31383740 |
cattttctttatggaaagcattttcaaaatatatttacatacatcaatatggtaaaaatttgttaacatgatgatgattagagcatagtaattacatacc |
31383839 |
T |
|
| Q |
309 |
gagtaatctgag |
320 |
Q |
| |
|
||||||| |||| |
|
|
| T |
31383840 |
gagtaatttgag |
31383851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University