View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14502_low_9 (Length: 320)

Name: NF14502_low_9
Description: NF14502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14502_low_9
NF14502_low_9
[»] chr8 (4 HSPs)
chr8 (13-305)||(29002937-29003229)
chr8 (237-278)||(75765-75805)
chr8 (13-45)||(6570984-6571016)
chr8 (13-45)||(14878745-14878777)
[»] scaffold0275 (2 HSPs)
scaffold0275 (13-45)||(22930-22962)
scaffold0275 (13-45)||(8446-8478)
[»] chr5 (4 HSPs)
chr5 (13-45)||(23756155-23756187)
chr5 (13-45)||(23821611-23821643)
chr5 (13-46)||(23434907-23434940)
chr5 (13-46)||(23446274-23446307)
[»] scaffold0041 (1 HSPs)
scaffold0041 (237-287)||(84448-84498)
[»] chr7 (2 HSPs)
chr7 (237-287)||(40881785-40881835)
chr7 (13-45)||(12198727-12198759)
[»] chr6 (1 HSPs)
chr6 (250-287)||(31638267-31638304)
[»] scaffold0772 (1 HSPs)
scaffold0772 (13-45)||(1608-1640)
[»] scaffold0278 (1 HSPs)
scaffold0278 (13-45)||(12974-13006)
[»] chr4 (1 HSPs)
chr4 (13-45)||(39043968-39044000)
[»] chr3 (4 HSPs)
chr3 (13-45)||(1993007-1993039)
chr3 (13-45)||(2005526-2005558)
chr3 (13-45)||(2721507-2721539)
chr3 (13-45)||(47974511-47974543)
[»] chr2 (1 HSPs)
chr2 (13-45)||(21119691-21119723)
[»] chr1 (1 HSPs)
chr1 (13-45)||(41801847-41801879)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 29003229 - 29002937
Alignment:
Q  13 attatactaaaacgattaattattgactcatcactcgactgtagtaagaatttcacataaatgcagctttgatcctcttattttagtaaaaccgtaattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29003229 attatactaaaacgattaattattgactcatcactcgactgtagtaagaatttcacataaatgcagctttgatcctcttattttagtaaaaccgtaattt 29003130  T
Q  113 tggtctccttatttttaatttcacaatttcccttcattccataactatttaacaatccatgattttaaccatctcattttaagacgtgacaatatatatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29003129 tggtctccttatttttaatttcacaatttcccttcattccataactatttaacaatccatgattttaaccatctcattttaagacgtgacaatatatatt 29003030  T
Q  213 gcataactagatatgaaaatgaagggcctaattgtcgagtcttcaaaaataggatgttaaattgagtcataaccagatatgcaaaggcaaaag 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29003029 gcataactagatatgaaaatgaagggcctaattgtcgagtcttcaaaaataggatgttaaattgagtcataaccagatatgcaaaggcaaaag 29002937  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 75805 - 75765
Alignment:
Q  237 ggcctaattgtcgagtcttcaaaaataggatgttaaattgag 278  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  75805 ggcctaattgttgagtcttcaaaaatagg-tgttaaattgag 75765  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 6570984 - 6571016
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  6570984 attatactaaaacgactaattattgactcatca 6571016  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 14878745 - 14878777
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  14878745 attatactaaaacgactaattattgactcatca 14878777  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 22930 - 22962
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  22930 attatactaaaacgattaattattgactcatca 22962  T

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Target: scaffold0275; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 8446 - 8478
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  8446 attatactaaaacgactaattattgactcatca 8478  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 23756187 - 23756155
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  23756187 attatactaaaacgattaattattgactcatca 23756155  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 23821643 - 23821611
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  23821643 attatactaaaacgattaattattgactcatca 23821611  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 23434940 - 23434907
Alignment:
Q  13 attatactaaaacgattaattattgactcatcac 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  23434940 attatactaaaacgactaattattgactcatcac 23434907  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 23446307 - 23446274
Alignment:
Q  13 attatactaaaacgattaattattgactcatcac 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  23446307 attatactaaaacgactaattattgactcatcac 23446274  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 84498 - 84448
Alignment:
Q  237 ggcctaattgtcgagtcttcaaaaataggatgttaaattgagtcataacca 287  Q
    |||||||||||||| |||| ||||||| | |||||||||||||| ||||||    
T  84498 ggcctaattgtcgattcttaaaaaatatggtgttaaattgagtcgtaacca 84448  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 40881785 - 40881835
Alignment:
Q  237 ggcctaattgtcgagtcttcaaaaataggatgttaaattgagtcataacca 287  Q
    |||||||||||||| |||| ||||||| | |||||||||||||| ||||||    
T  40881785 ggcctaattgtcgattcttaaaaaatatggtgttaaattgagtcgtaacca 40881835  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 12198759 - 12198727
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  12198759 attatactaaaacgactaattattgactcatca 12198727  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 31638267 - 31638304
Alignment:
Q  250 agtcttcaaaaataggatgttaaattgagtcataacca 287  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  31638267 agtcttaaaaaatgggatgttaaattgagtcataacca 31638304  T

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Target: scaffold0772 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 1640 - 1608
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  1640 attatactaaaacgactaattattgactcatca 1608  T

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Target: scaffold0278 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 12974 - 13006
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  12974 attatactaaaacgactaattattgactcatca 13006  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 39043968 - 39044000
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  39043968 attatactaaaacgactaattattgactcatca 39044000  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 1993039 - 1993007
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  1993039 attatactaaaacgactaattattgactcatca 1993007  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 2005558 - 2005526
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  2005558 attatactaaaacgactaattattgactcatca 2005526  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 2721539 - 2721507
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  2721539 attatactaaaacgactaattattgactcatca 2721507  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 47974543 - 47974511
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  47974543 attatactaaaacgactaattattgactcatca 47974511  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 21119723 - 21119691
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  21119723 attatactaaaacgactaattattgactcatca 21119691  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 41801879 - 41801847
Alignment:
Q  13 attatactaaaacgattaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  41801879 attatactaaaacgactaattattgactcatca 41801847  T

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