View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14503_high_4 (Length: 201)

Name: NF14503_high_4
Description: NF14503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14503_high_4
NF14503_high_4
[»] scaffold2003 (1 HSPs)
scaffold2003 (17-170)||(469-622)
[»] chr2 (7 HSPs)
chr2 (17-128)||(7868079-7868190)
chr2 (56-128)||(36390956-36391028)
chr2 (67-120)||(36391660-36391713)
chr2 (79-127)||(44094817-44094865)
chr2 (138-180)||(8145386-8145428)
chr2 (86-128)||(23876070-23876112)
chr2 (79-128)||(8905404-8905453)
[»] chr1 (14 HSPs)
chr1 (17-129)||(29334212-29334324)
chr1 (44-111)||(27418179-27418246)
chr1 (138-183)||(34716424-34716469)
chr1 (51-130)||(43316354-43316433)
chr1 (65-120)||(30466189-30466244)
chr1 (34-120)||(4641717-4641803)
chr1 (62-128)||(38931313-38931379)
chr1 (138-180)||(43317122-43317164)
chr1 (55-120)||(4640535-4640600)
chr1 (79-128)||(12926620-12926669)
chr1 (17-97)||(13361633-13361713)
chr1 (34-102)||(31788231-31788299)
chr1 (132-180)||(50428152-50428200)
chr1 (71-127)||(50950145-50950201)
[»] chr7 (15 HSPs)
chr7 (17-102)||(30915759-30915844)
chr7 (17-127)||(30402791-30402901)
chr7 (79-128)||(40320410-40320459)
chr7 (86-129)||(6730164-6730207)
chr7 (86-129)||(24995850-24995893)
chr7 (86-129)||(29060746-29060789)
chr7 (80-127)||(36844612-36844659)
chr7 (81-120)||(44540995-44541034)
chr7 (86-128)||(9122649-9122691)
chr7 (86-120)||(24996690-24996724)
chr7 (138-188)||(40320408-40320458)
chr7 (86-128)||(42607080-42607122)
chr7 (62-127)||(27600078-27600143)
chr7 (79-120)||(40257802-40257843)
chr7 (87-127)||(32871148-32871188)
[»] chr5 (13 HSPs)
chr5 (36-129)||(18152668-18152761)
chr5 (69-128)||(16689592-16689651)
chr5 (78-128)||(6804890-6804940)
chr5 (138-188)||(9923388-9923438)
chr5 (62-183)||(6804816-6804936)
chr5 (86-126)||(4789521-4789561)
chr5 (24-83)||(6353728-6353787)
chr5 (79-128)||(4607136-4607185)
chr5 (79-128)||(9923387-9923436)
chr5 (67-120)||(26712376-26712429)
chr5 (67-120)||(26982114-26982167)
chr5 (36-127)||(26711568-26711660)
chr5 (36-127)||(26981305-26981397)
[»] chr3 (11 HSPs)
chr3 (27-127)||(8653668-8653768)
chr3 (35-127)||(44406915-44407007)
chr3 (17-127)||(47481179-47481289)
chr3 (80-128)||(49160986-49161034)
chr3 (67-134)||(8652803-8652870)
chr3 (46-120)||(45501261-45501335)
chr3 (67-133)||(51421663-51421729)
chr3 (32-98)||(52398352-52398418)
chr3 (17-97)||(11267011-11267092)
chr3 (87-128)||(33455789-33455830)
chr3 (136-180)||(45297547-45297591)
[»] chr4 (13 HSPs)
chr4 (27-98)||(55514525-55514596)
chr4 (62-127)||(232032-232097)
chr4 (34-128)||(30809460-30809554)
chr4 (35-128)||(23383309-23383402)
chr4 (86-127)||(25970106-25970147)
chr4 (62-127)||(45330565-45330630)
chr4 (79-129)||(38009282-38009332)
chr4 (138-180)||(39429943-39429985)
chr4 (138-188)||(43511390-43511440)
chr4 (79-128)||(20351311-20351360)
chr4 (79-128)||(25970803-25970852)
chr4 (86-127)||(36450728-36450769)
chr4 (138-183)||(54453095-54453140)
[»] scaffold0150 (1 HSPs)
scaffold0150 (81-127)||(14012-14058)
[»] chr8 (9 HSPs)
chr8 (138-180)||(42346111-42346153)
chr8 (56-128)||(40450963-40451035)
chr8 (79-130)||(27321596-27321647)
chr8 (86-128)||(35943075-35943117)
chr8 (27-97)||(36936645-36936715)
chr8 (62-127)||(37562295-37562360)
chr8 (79-127)||(7054090-7054138)
chr8 (29-97)||(36936368-36936436)
chr8 (67-103)||(40449495-40449531)
[»] chr6 (3 HSPs)
chr6 (137-180)||(29290122-29290165)
chr6 (81-127)||(8384020-8384066)
chr6 (138-188)||(28975340-28975390)
[»] scaffold0129 (1 HSPs)
scaffold0129 (67-127)||(43206-43266)


Alignment Details
Target: scaffold2003 (Bit Score: 122; Significance: 8e-63; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 469 - 622
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgc 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  469 aatataatgctgagggactatgataaaagtgtgctctttatttgatctagtggttaaaatttacttttccatggtgggaaacaactcccctttcccatgc 568  T
Q  117 taaatcccacctgactttgggggtggggtttagcatggcaatgaagagttgttt 170  Q
    | ||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  569 ttaatcccacctgactttgggggtgagatttagcatgggaatgaagagttgttt 622  T

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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 7868079 - 7868190
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgc 116  Q
    |||||| |||| |||||||||||||||  |||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| | |||||    
T  7868079 aatatagtgctaagggactatgataaatatgtgctctttatttgatctagtggttaaaatttactttcccatggtgggaaacaactcccctttctcatgc 7868178  T
Q  117 taaatcccacct 128  Q
    ||||||||||||    
T  7868179 taaatcccacct 7868190  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 36391028 - 36390956
Alignment:
Q  56 atttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||| |||| |||||||||||||||||  ||||||||||||||||| ||||| ||||||||||| |||||||    
T  36391028 atttgatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaaccccacct 36390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 36391660 - 36391713
Alignment:
Q  67 tggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    |||||||||||||||||  |||||||| |||||||||||||| ||||| |||||    
T  36391660 tggttaaaatttactttcccatggtggaaaacaactcccctttcccatactaaa 36391713  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 44094817 - 44094865
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    ||||||| ||||||||||||||||  |||| ||||||||||||||||||    
T  44094817 acttttttatggtgggaaacaactttcctttcccatgctaaatcccacc 44094865  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 8145386 - 8145428
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatgg 180  Q
    |||||||||||| |||| ||||||||||||||||||| |||||    
T  8145386 ggtggggtttagaatgggaatgaagagttgtttcccaccatgg 8145428  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23876070 - 23876112
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    |||||||||||||||||||| || ||||||||||| |||||||    
T  23876070 catggtgggaaacaactcccatttcccatgctaaaccccacct 23876112  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 8905453 - 8905404
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||||||||||||||||||||   | | |||||||||||||||||||    
T  8905453 actttttcatggtgggaaacaactagtcattcccatgctaaatcccacct 8905404  T

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Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 29334324 - 29334212
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgc 116  Q
    |||||| ||||||| || |||||||||||| ||||||||||||| |||| ||| |||||||||||||  |||||||||||||||||  || | |||||||    
T  29334324 aatatagtgctgagagaatatgataaaagtatggtctttatttgatctaatgggtaaaatttactttcccatggtgggaaacaactatccattcccatgc 29334225  T
Q  117 taaatcccacctg 129  Q
    ||||| |||||||    
T  29334224 taaatgccacctg 29334212  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 27418246 - 27418179
Alignment:
Q  44 agtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccc 111  Q
    |||||| |||| ||||| |||| ||||||||| |||||||||||||||||||||||| |||| |||||    
T  27418246 agtgtgctcttcatttgatctaatggttaaaaattactttttcatggtgggaaacaattccctttccc 27418179  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 34716424 - 34716469
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatggaaa 183  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  34716424 ggtggggtttagcatgggaatggagagttgtttcccatcatggaaa 34716469  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 43316433 - 43316354
Alignment:
Q  51 tctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacctga 130  Q
    |||||||||| || | ||| |||||||||||||  |||||||||||||||||  || | |||||||||||| ||||||||    
T  43316433 tctttatttgatcaaatggataaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacctga 43316354  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 30466244 - 30466189
Alignment:
Q  65 agtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    |||||| ||||| ||||||  ||||||||||||||||||||| | |||||||||||    
T  30466244 agtggtcaaaatctactttcccatggtgggaaacaactccccattcccatgctaaa 30466189  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 4641717 - 4641803
Alignment:
Q  34 ctatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    ||||||||||| | || ||| |||||| || | ||||| ||| |||||||  | ||||||||||||| ||||||| |||||||||||    
T  4641717 ctatgataaaactatgttctctatttgatccaatggttgaaaattactttcccttggtgggaaacaattcccctttcccatgctaaa 4641803  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 38931379 - 38931313
Alignment:
Q  62 tctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    |||| ||||| ||||| |||||  ||||||||||||||| ||||||| | ||||||||| |||||||    
T  38931379 tctaatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaaccccacct 38931313  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 43317164 - 43317122
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatgg 180  Q
    ||||||||||||||||| |||||  ||||||||||||||||||    
T  43317164 ggtggggtttagcatgggaatgagaagttgtttcccatcatgg 43317122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 4640600 - 4640535
Alignment:
Q  55 tatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    |||||| |||| ||||| ||| |||||||  ||||||||||||||| |||||||  ||||||||||    
T  4640600 tatttgatctaatggttgaaaattactttcccatggtgggaaacaattcccctttaccatgctaaa 4640535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 12926620 - 12926669
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||||||||||||||| |||||| ||| ||||| ||||| |||||||    
T  12926620 actttttcatggtgggaaaaaactccacttacccatactaaaccccacct 12926669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 13361713 - 13361633
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaa 97  Q
    |||||| || |||| ||| |||||||| ||||| |||||| ||| ||| |||||| ||||| |||||  ||||||||||||    
T  13361713 aatatagtgttgagagaccatgataaatgtgtgttctttacttgatctggtggttcaaattaactttcccatggtgggaaa 13361633  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 31788231 - 31788299
Alignment:
Q  34 ctatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaact 102  Q
    ||||| ||||||| || ||| |||||  |||| ||||||||||| |||||  |||||||||||||||||    
T  31788231 ctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaact 31788299  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 50428200 - 50428152
Alignment:
Q  132 tttgggggtggggtttagcatggcaatgaagagttgtttcccatcatgg 180  Q
    |||| ||||||||||||| |||| |||| |||||||||| |||||||||    
T  50428200 tttgagggtggggtttagaatgggaatggagagttgttttccatcatgg 50428152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 50950201 - 50950145
Alignment:
Q  71 taaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||||||||||||| |||||||||||||||||  || |  ||||||||||| |||||    
T  50950201 taaaatttacttttccatggtgggaaacaactatccatttccatgctaaatgccacc 50950145  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 30915844 - 30915759
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaact 102  Q
    |||||| || |||| || |||||||||||| ||||||| ||||| |||| ||| |||||||||||||  |||||||||||||||||    
T  30915844 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggtgggaaacaact 30915759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 30402791 - 30402901
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgc 116  Q
    |||||| || |||| || |||||||||||| ||||||| ||||| |||| ||| |||||||||||||  |||||||| ||| ||||  || | | |||||    
T  30402791 aatatagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggtggaaaataactatccattctcatgc 30402890  T
Q  117 taaatcccacc 127  Q
    ||||| |||||    
T  30402891 taaatgccacc 30402901  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 40320410 - 40320459
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    |||||| |||||||||||||||||| |||| ||||||||||| |||||||    
T  40320410 acttttccatggtgggaaacaactctcctttcccatgctaaaccccacct 40320459  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 6730164 - 6730207
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacctg 129  Q
    ||||||||||||||||| ||||| ||||||||||| ||||||||    
T  6730164 catggtgggaaacaacttccctttcccatgctaaaccccacctg 6730207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 24995893 - 24995850
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacctg 129  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||    
T  24995893 catggtgggaaacaactcccctttcccattctaaaccccacctg 24995850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 29060746 - 29060789
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacctg 129  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||    
T  29060746 catggtgggaaacaattcccctttcccatgctaaaccccacctg 29060789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 36844659 - 36844612
Alignment:
Q  80 ctttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||| ||||||||||||||||||| |||| ||||||||||| ||||||    
T  36844659 ctttctcatggtgggaaacaactcacctttcccatgctaaaccccacc 36844612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 44541034 - 44540995
Alignment:
Q  81 tttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  44541034 tttttcatggtgggaaacaactctcctttcccatgctaaa 44540995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 9122691 - 9122649
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||    
T  9122691 catggtgggaaacaacttccctttcccatgctaaatgccacct 9122649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 24996690 - 24996724
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaa 120  Q
    ||||||||||||||||||||||| |||||||||||    
T  24996690 catggtgggaaacaactcccctttcccatgctaaa 24996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 40320458 - 40320408
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatggaaaggttt 188  Q
    ||||||||||||||||| || | |||||||||||||| |||||||| ||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatggaaaagttt 40320408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 42607122 - 42607080
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||    
T  42607122 catggtgggaaacaattcccctttcccatgctaaaccccacct 42607080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 27600078 - 27600143
Alignment:
Q  62 tctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    ||||||||| ||| || |||||  ||||||||||||||||||||||| |||||  ||||| |||||    
T  27600078 tctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 40257802 - 40257843
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    ||||| ||||||||||||||||||||| || |||||||||||    
T  40257802 actttctcatggtgggaaacaactcccatttcccatgctaaa 40257843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 32871148 - 32871188
Alignment:
Q  87 atggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||||||||||||||||||| | ||||||||||| ||||||    
T  32871148 atggtgggaaacaactccccattcccatgctaaaccccacc 32871188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 18152761 - 18152668
Alignment:
Q  36 atgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacctg 129  Q
    ||||||||||| ||||||| ||||| |||| ||| ||||||||||||| |||| |||||||||||||  || | ||| |||||||| |||||||    
T  18152761 atgataaaagtatggtcttcatttgatctaatgggtaaaatttactttctcatagtgggaaacaactatccattcccgtgctaaatgccacctg 18152668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 16689651 - 16689592
Alignment:
Q  69 gttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    |||||||||||||||| |||||||||||| |||| ||||| ||||| ||||| |||||||    
T  16689651 gttaaaatttacttttccatggtgggaaagaacttccctttcccatactaaaccccacct 16689592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 6804940 - 6804890
Alignment:
Q  78 tactttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||| |||||||    
T  6804940 tacttttccatggtgggaaacaactcctctttcccatgctaaaccccacct 6804890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 9923388 - 9923438
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatggaaaggttt 188  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||| ||||    
T  9923388 ggtggggtttagcatgggaatggagagttgtttcccaccatggaaaagttt 9923438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 6804816 - 6804936
Alignment:
Q  62 tctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacctgactttgggggtggggtttagcatggcaatgaa 161  Q
    |||| |||| |||||| |||||  ||||||||||||||||| | ||  |||||||||||| ||||  | |||   || ||||||||||||||| || ||     
T  6804816 tctaatggtcaaaattgactttcccatggtgggaaacaacttcactgacccatgctaaatgccacacgtcttaaagg-tggggtttagcatgggaaagag 6804914  T
Q  162 gagttgtttcccatcatggaaa 183  Q
    ||||||||||||| ||||||||    
T  6804915 gagttgtttcccaccatggaaa 6804936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 4789561 - 4789521
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccac 126  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  4789561 catggtgggaaacaactcccctttcccatgctaaaccccac 4789521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 6353787 - 6353728
Alignment:
Q  24 tgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttacttt 83  Q
    |||||||||| ||||||||||||||| | || ||||  |||| |||||||||||||||||    
T  6353787 tgctgagggagtatgataaaagtgtgtttttcatttcatctaatggttaaaatttacttt 6353728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 4607136 - 4607185
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||| ||||||||||||||||||| || | |||||||||||| ||||||    
T  4607136 actttctcatggtgggaaacaactctccattcccatgctaaatgccacct 4607185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 9923436 - 9923387
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    |||||| |||||||||||||||||| || | ||||||||||| |||||||    
T  9923436 acttttccatggtgggaaacaactctccattcccatgctaaaccccacct 9923387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 26712376 - 26712429
Alignment:
Q  67 tggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    |||||||||||  ||||  ||||||||||||||||| ||||| |||||||||||    
T  26712376 tggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaa 26712429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 26982114 - 26982167
Alignment:
Q  67 tggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    |||||||||||  ||||  ||||||||||||||||| ||||| |||||||||||    
T  26982114 tggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaa 26982167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 26711660 - 26711568
Alignment:
Q  36 atgataaaagtgtggtctttatttggtctagtggt-taaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    ||||||||| |||| ||| || ||| ||||||||| |||||||||||||   ||| ||||||||||||  |||| ||||| ||||| ||||||    
T  26711660 atgataaaattgtgttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 26981397 - 26981305
Alignment:
Q  36 atgataaaagtgtggtctttatttggtctagtggt-taaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    ||||||||| |||| ||| || ||| ||||||||| |||||||||||||   ||| ||||||||||||  |||| ||||| ||||| ||||||    
T  26981397 atgataaaattgtgttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 8653668 - 8653768
Alignment:
Q  27 tgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccac 126  Q
    ||||||| |||||||| |||||| |  | ||||| || | ||||||||||||||||| ||||||||||||||||  ||||||  |||||||||| |||||    
T  8653668 tgagggaatatgataagagtgtgtttctcatttgatcaaatggttaaaatttactttctcatggtgggaaacaatcccccttttccatgctaaaccccac 8653767  T
Q  127 c 127  Q
    |    
T  8653768 c 8653768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 44406915 - 44407007
Alignment:
Q  35 tatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||||||||||| ||||||| ||||| |||| ||| |||||||||||||  |||||||||||||||||  |  | |||||||||||| |||||    
T  44406915 tatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggtgggaaacaactatctattcccatgctaaatgccacc 44407007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 47481179 - 47481289
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgc 116  Q
    |||||| || |||| || |||||||||||| ||||||||||||| |||| ||| ||||||||||||||  ||||| | ||||||||  || | | |||||    
T  47481179 aatatagtgttgagagaatatgataaaagtatggtctttatttgatctaatggataaaatttacttttctatggtagaaaacaactatccattctcatgc 47481278  T
Q  117 taaatcccacc 127  Q
    ||||| |||||    
T  47481279 taaatgccacc 47481289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 49161034 - 49160986
Alignment:
Q  80 ctttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||| |||||| |||||||||||||||| ||||||||||| |||||||    
T  49161034 cttttccatggtaggaaacaactcccctttcccatgctaaaccccacct 49160986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 8652870 - 8652803
Alignment:
Q  67 tggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacctgacttt 134  Q
    |||| ||||||||||||  ||||||||||| | | ||||||| ||||||||||| ||||||| |||||    
T  8652870 tggtgaaaatttactttcccatggtgggaaccgattcccctttcccatgctaaaccccacctaacttt 8652803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 45501261 - 45501335
Alignment:
Q  46 tgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaa 120  Q
    |||| |||| ||||| || | ||||| |||||||||||  |||||||| |||||||||||||| ||||| |||||    
T  45501261 tgtgttcttcatttgatccaatggtttaaatttactttcccatggtggaaaacaactcccctttcccatactaaa 45501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 51421663 - 51421729
Alignment:
Q  67 tggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacctgactt 133  Q
    ||||| ||||| |||||  ||||||||||||||| ||||||| | ||||||||| ||||||| ||||    
T  51421663 tggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaaccccaccttactt 51421729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 52398418 - 52398352
Alignment:
Q  32 gactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaac 98  Q
    ||||||| ||||  |||| ||| |||||  |||| |||||||||||||||||| |||||||||||||    
T  52398418 gactatgttaaagatgtgttctctatttaatctaatggttaaaatttacttttccatggtgggaaac 52398352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 11267092 - 11267011
Alignment:
Q  17 aatataatgctgagggactatgataaaagtgtggtctttatttggtctagtggttaaaattta-ctttttcatggtgggaaa 97  Q
    ||||||||| |||| ||||||||||| | | |||||||| |||| ||||||| ||||||  || |||| |||||||||||||    
T  11267092 aatataatgttgagagactatgataatactatggtctttctttgatctagtgcttaaaaaatatctttctcatggtgggaaa 11267011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 33455789 - 33455830
Alignment:
Q  87 atggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    |||||||||||||| ||||||| ||||||||||| |||||||    
T  33455789 atggtgggaaacaattcccctttcccatgctaaaccccacct 33455830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 45297547 - 45297591
Alignment:
Q  136 ggggtggggtttagcatggcaatgaagagttgtttcccatcatgg 180  Q
    |||||||||||||| |||| || | ||||||||||||||||||||    
T  45297547 ggggtggggtttagtatgggaaaggagagttgtttcccatcatgg 45297591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 55514596 - 55514525
Alignment:
Q  27 tgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaac 98  Q
    |||| |||||| ||||| ||||| |||||||||| | |||||||||||||| ||||||||||||| ||||||    
T  55514596 tgagagactataataaatgtgtgctctttatttgatttagtggttaaaattaactttttcatggtaggaaac 55514525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 232032 - 232097
Alignment:
Q  62 tctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||| |||||||||||||||||  ||||||||||||||||| ||||| ||||| ||||| ||||||    
T  232032 tctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacc 232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 30809460 - 30809554
Alignment:
Q  34 ctatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||||||| |||| || ||| ||  ||||||||| ||| || ||||| ||||||||| |||||||||||||| |||||  ||||| ||||||    
T  30809460 ctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaatgccacct 30809554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 23383402 - 23383309
Alignment:
Q  35 tatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    |||||||| |||||| |||| ||||| || | ||| ||||||| |||||  |||||||||||||||||| |||| | ||| ||||| |||||||    
T  23383402 tatgataagagtgtgttcttcatttgatcgaatggataaaattaactttcccatggtgggaaacaactctcctttctcattctaaaccccacct 23383309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 25970147 - 25970106
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  25970147 catggtgggaaacaactcccctttcccatgctaaaccccacc 25970106  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 45330630 - 45330565
Alignment:
Q  62 tctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    ||||||||| ||| || |||||| ||||||||||||||||||||||| |||||  ||||| |||||    
T  45330630 tctagtggtcaaatttaacttttccatggtgggaaacaactcccctttcccattttaaattccacc 45330565  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 38009332 - 38009282
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacctg 129  Q
    |||||| ||||||||||||||| |  |||| ||||||||||||||||||||    
T  38009332 acttttccatggtgggaaacaattatcctttcccatgctaaatcccacctg 38009282  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 39429985 - 39429943
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatgg 180  Q
    ||||||||||||||||| |||| |||||||||||||| |||||    
T  39429985 ggtggggtttagcatgggaatggagagttgtttcccaccatgg 39429943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 43511390 - 43511440
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatggaaaggttt 188  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| |||| ||||    
T  43511390 ggtggggtttagcatggaaatgaggagttgtttcctatcattgaaaagttt 43511440  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 20351311 - 20351360
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||||||||||||||||||||| || | ||||| ||||| |||||||    
T  20351311 actttttcatggtgggaaacaactctccattcccatactaaaccccacct 20351360  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 25970803 - 25970852
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||| ||||||||||||||||||||| || ||||| |||||| ||||||    
T  25970803 actttctcatggtgggaaacaactcccttttcccatactaaatgccacct 25970852  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 36450769 - 36450728
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  36450769 catggtggaaaacaactcccctttcccatgctaaataccacc 36450728  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 54453095 - 54453140
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatggaaa 183  Q
    ||||||||||||||||| ||||   |||||||||||||||||||||    
T  54453095 ggtggggtttagcatgggaatgggaagttgtttcccatcatggaaa 54453140  T

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Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 14058 - 14012
Alignment:
Q  81 tttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  14058 ttttccatggtgggaaacaactcccctttcccatgctaaatcccacc 14012  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 42346153 - 42346111
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatgg 180  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  42346153 ggtggggtttagcatgggaatggagagttgtttcccatcatgg 42346111  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 40450963 - 40451035
Alignment:
Q  56 atttggtctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||| |||| |||||||||||||||||  |||||||||||||||||  | || ||||| ||||| |||||||    
T  40450963 atttgatctaatggttaaaatttactttcccatggtgggaaacaacttacatttcccatactaaaccccacct 40451035  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 27321647 - 27321596
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacctga 130  Q
    |||||||||||||||||||||||||   || ||||||||||| |||||||||    
T  27321647 actttttcatggtgggaaacaactcttatttcccatgctaaaccccacctga 27321596  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 35943117 - 35943075
Alignment:
Q  86 catggtgggaaacaactccccttccccatgctaaatcccacct 128  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||    
T  35943117 catggtgggaaacaacttccctttcccatgctaaaccccacct 35943075  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 36936645 - 36936715
Alignment:
Q  27 tgagggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaa 97  Q
    ||||||| ||||||||||||||  ||||||||   |||| |||||||||||||||||  |||| |||||||    
T  36936645 tgagggagtatgataaaagtgtattctttattgaatctaatggttaaaatttactttcccatgatgggaaa 36936715  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 37562360 - 37562295
Alignment:
Q  62 tctagtggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||| ||||||||||| |||||   |||||||||||||| || |||| ||||||||||| ||||||    
T  37562360 tctaatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgctaaaccccacc 37562295  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 7054138 - 7054090
Alignment:
Q  79 actttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||||| |||||||||||||||||| || | |||||||||||| |||||    
T  7054138 acttttccatggtgggaaacaactctccattcccatgctaaatgccacc 7054090  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 36936368 - 36936436
Alignment:
Q  29 agggactatgataaaagtgtggtctttatttggtctagtggttaaaatttactttttcatggtgggaaa 97  Q
    ||||| ||||||||||||||  ||||||||   |||| |||||||||||||||||  |||| |||||||    
T  36936368 agggagtatgataaaagtgtattctttattgaatctaatggttaaaatttactttcccatgatgggaaa 36936436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 40449531 - 40449495
Alignment:
Q  67 tggttaaaatttactttttcatggtgggaaacaactc 103  Q
    |||||||||||||||||| |||||| |||||||||||    
T  40449531 tggttaaaatttacttttccatggtaggaaacaactc 40449495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 29290122 - 29290165
Alignment:
Q  137 gggtggggtttagcatggcaatgaagagttgtttcccatcatgg 180  Q
    |||||||||||||||||| |||| |||||||||||||| |||||    
T  29290122 gggtggggtttagcatggaaatggagagttgtttcccaccatgg 29290165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 8384020 - 8384066
Alignment:
Q  81 tttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    |||| ||||||||||||||||||| ||| ||||||||||| ||||||    
T  8384020 ttttccatggtgggaaacaactccactttcccatgctaaaccccacc 8384066  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 28975340 - 28975390
Alignment:
Q  138 ggtggggtttagcatggcaatgaagagttgtttcccatcatggaaaggttt 188  Q
    ||||||||||||||||| || | |||||||||||| |||||||||| ||||    
T  28975340 ggtggggtttagcatgggaaaggagagttgtttcctatcatggaaaagttt 28975390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 43206 - 43266
Alignment:
Q  67 tggttaaaatttactttttcatggtgggaaacaactccccttccccatgctaaatcccacc 127  Q
    ||||||| |||||||||  |||| ||||||||||||||||||  |||| ||||| ||||||    
T  43206 tggttaagatttactttcccatgatgggaaacaactccccttttccatactaaaccccacc 43266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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