View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14503_low_1 (Length: 412)
Name: NF14503_low_1
Description: NF14503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14503_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 31712279 - 31712659
Alignment:
| Q |
16 |
cattttttatgtcttaacccatgccactttaccactcattcgaggacaagtccattctactcctaccctagtccacttctcctacattttaataatcgtc |
115 |
Q |
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| T |
31712279 |
cattttttatgtcttaacccatgccactttaccactcattcgaggacaagtccattctactcctaccctagtccacttctcctacattttaataatcgtc |
31712378 |
T |
|
| Q |
116 |
ccatcatattctccttatacttgatcttctttttcacattaggttattctcttttgtttatctttctttcataactcaaacaaagttttaatgaaattgc |
215 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31712379 |
ccatcatattctccttatactttatcttctttt-cacattaggttattctcttttgtttatctttctttcataactcaaacaaagtcttaatgaaattgc |
31712477 |
T |
|
| Q |
216 |
agtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31712478 |
agtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttat |
31712577 |
T |
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| Q |
316 |
catagacatggtgttagattgtgagaaaggagacaataatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
397 |
Q |
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| T |
31712578 |
catagacatggtgttagattgtgagaagggagacaataatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
31712659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 31735362 - 31735605
Alignment:
| Q |
154 |
ttaggttattctcttttgtttatctttctttcataactcaaacaaagttttaatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttg |
253 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||| ||||| || |
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| T |
31735362 |
ttagtttattctcttttgcttatctttctttcataactcaaacaaagtcttaatgaaattgtagtggatattgcatgactggaatgacgaagaatgtgtg |
31735461 |
T |
|
| Q |
254 |
aagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaaaggagacaata |
353 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31735462 |
aagatattaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaata |
31735561 |
T |
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| Q |
354 |
atgaatcagttgaaacacaactcttctttgatatgttgatgatg |
397 |
Q |
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| T |
31735562 |
atgaatcggttgaaacaaaactcttctttgatatgttgatgatg |
31735605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 162 - 397
Target Start/End: Original strand, 31684699 - 31684934
Alignment:
| Q |
162 |
ttctcttttgtttatctttctttcataactcaaacaaagttttaatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttgaagatttt |
261 |
Q |
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||||||||| | |||| ||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||| |||||| ||||| | ||||| || |
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| T |
31684699 |
ttctcttttctctatccttctttcataactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacgaggaatgtgtaaagatatt |
31684798 |
T |
|
| Q |
262 |
aaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaaaggagacaataatgaatca |
361 |
Q |
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| T |
31684799 |
aaagaattgtaaggatgcaatatcaaagaaaggtaaagaagggaaggtggttatcttcgacaaggttttcgacagtgagaagggaaacattaatgaatca |
31684898 |
T |
|
| Q |
362 |
gttgaaacacaactcttctttgatatgttgatgatg |
397 |
Q |
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| T |
31684899 |
gttgaaacacaactcttctttgatatgtttatgatg |
31684934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 204 - 397
Target Start/End: Original strand, 31704056 - 31704249
Alignment:
| Q |
204 |
taatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaagg |
303 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||| ||||| |||| || ||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
31704056 |
taataaaattgcagtggatattgcatgattggaatgacgaggaatgtgtgaaaatattaaagaattgcaaggatgcaatatcaaagaaaggtaaacaagg |
31704155 |
T |
|
| Q |
304 |
aaaggtagttatcatagacatggtgttagattgtgagaaaggagacaataatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
397 |
Q |
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| T |
31704156 |
gaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
31704249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 31715402 - 31715517
Alignment:
| Q |
213 |
tgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagt |
312 |
Q |
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||||||||||||||||||||||||| || ||| |||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||| | |
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| T |
31715402 |
tgcagtggatattgcatgattggaatgatgaggaatgcgtaaagatattaaggaattgtaaggatgcaatagcgaagaaaggtaaagaaggaaaggtgat |
31715501 |
T |
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| Q |
313 |
tatcatagacatggtg |
328 |
Q |
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| T |
31715502 |
tatcatagacatggtg |
31715517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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