View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14503_low_2 (Length: 378)
Name: NF14503_low_2
Description: NF14503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14503_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 33 - 360
Target Start/End: Complemental strand, 24913520 - 24913198
Alignment:
| Q |
33 |
attatacttcagtggcggacaaacacattatagactgaaggttagacttccagctaatcgcatttcgatagagagtgaaaatgcaaccagtttgagatct |
132 |
Q |
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| T |
24913520 |
attatacttcagtggtggacaaacacattatagactgaaggttagacttccagctaatcgcatttcgatagagagtgaaaatgccaccagtttgagatct |
24913421 |
T |
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| Q |
133 |
tcttttgtccagattaattgcataatcaccataataccactgatttcagttcagctttagatctttcataaatgagaccaacattttgagtccatccact |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24913420 |
tcttttgtccagattaattgcataatcaccataataccactaat-----ttcagctttagatatttcataaatgagaccaacattttgagtccatccact |
24913326 |
T |
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| Q |
233 |
ttacggtttgccaatacatagaaactaacgaaaacaccagctaataagattcggagattgacaacttacatgcggaagagatcgttggacgagggttaat |
332 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
24913325 |
ttacagtttgccaatacatagaaactaacgaaaacaccagctaataagattcggagattgacaacttacatgcgggagagatcgttggacgaggattaat |
24913226 |
T |
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| Q |
333 |
atgctaaaccttgggggctcggtattgg |
360 |
Q |
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||| |||||||||||||||| ||||||| |
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| T |
24913225 |
atgttaaaccttgggggctccgtattgg |
24913198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 182 - 360
Target Start/End: Complemental strand, 24891452 - 24891272
Alignment:
| Q |
182 |
ttcagctttagatctttcataaatgagaccaacattttgagtccatccactttacggtttgccaatacatagaaactaacgaaaacaccagctaataaga |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
24891452 |
ttcagctttagatctttcataaatgagaccaacattttgaatccatccactttacagcttgccaatagacggaaactaacgaaaacaccagctaataaga |
24891353 |
T |
|
| Q |
282 |
ttcggagattgacaacttacatgcggaagagatcgttggac--gagggttaatatgctaaaccttgggggctcggtattgg |
360 |
Q |
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|||||||||||||||||||||||||| |||||| |||||| |||| | ||| ||||||||||||||| ||| ||||||| |
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| T |
24891352 |
ttcggagattgacaacttacatgcggttgagatccttggacaagaggataaatctgctaaaccttggggactcagtattgg |
24891272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 24891615 - 24891482
Alignment:
| Q |
33 |
attatacttcagtggcggacaaacacattatagactgaaggttagacttccagctaatcgcatttcgatagagagtgaaaatgcaaccagtttgagatct |
132 |
Q |
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||||| ||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||| |
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| T |
24891615 |
attatgcttcagtggtggacaaaagcactatagactaaaggttagacttccagctaatcgcatttcgatataaagtgaacatgcaactagtttgagatct |
24891516 |
T |
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| Q |
133 |
tcttttgtccagattaattgcataatcaccataa |
166 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
24891515 |
tcttttgtccagattaattgcataatcatcataa |
24891482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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