View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14503_low_4 (Length: 236)
Name: NF14503_low_4
Description: NF14503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14503_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27559479 - 27559258
Alignment:
| Q |
1 |
agcctcaaattttgtccatcaaagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaagagctaaacttctag |
100 |
Q |
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| T |
27559479 |
agcctcaaattttgtccatcaaagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaagagctaaacttctag |
27559380 |
T |
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| Q |
101 |
gaagaccaacaaaggattgcttattttctgatcctgctagagatggaaagaggtaaaaaatccataattctctagctacctaactttacttacttgacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27559379 |
gaagaccaacaaaggattgcttattttctgatcctgctagagatggaaagaggtaaagaatccataattatctagctacctaactttacttacttgacaa |
27559280 |
T |
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| Q |
201 |
attgatatatcggattgttctt |
222 |
Q |
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|||||||||||| ||||||||| |
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| T |
27559279 |
attgatatatcgaattgttctt |
27559258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 42351462 - 42351659
Alignment:
| Q |
22 |
aagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaagagctaaacttctaggaagaccaacaaaggattgct |
121 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |
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| T |
42351462 |
aagcccggacaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctatattaagagctaaacttccaggaagaccaaccaaggattgct |
42351561 |
T |
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| Q |
122 |
tattttctgatcctgctagagatggaaagaggtaaaaaatccataattctctagctacctaactttacttacttgacaaattgatatatcggattgtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
42351562 |
tattttctgatcctgctagagatggaaagaggtaaagaatccataattctctagctacctaactttaattacttgacaaattgatatatcagattgtt |
42351659 |
T |
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