View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_high_1 (Length: 777)

Name: NF14504_high_1
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_high_1
NF14504_high_1
[»] chr6 (1 HSPs)
chr6 (31-761)||(1920117-1920849)


Alignment Details
Target: chr6 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 31 - 761
Target Start/End: Original strand, 1920117 - 1920849
Alignment:
Q  31 tgatggttttgctagccaggaatcacaaactattgaaaatgttcctctcttgaaagggtataaaagtctaaaattctaaaaacaaaatttggaagtagat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1920117 tgatggttttgctagccaggaatcacaaactattgaaaatgttcctctcttgaaaggttataaaagtctaaaattctaaaaacaaaatttggaagtagat 1920216  T
Q  131 gtagatggagacattattagtagaagacatgtacatgatagataactctcttgcctctcaattataagaaattcataattcattaatgtttaatcttact 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1920217 gtagatggagacattattagtagaagacatgtacatgatagataactctcttgcctctcaattataagaaattcataattcattaatgtttaatattact 1920316  T
Q  231 actctcgtaatagaaaaaagatatagttttacactaacatccaatagaaataaaatatttgatagctatacttaaaaag--ggttacaaaataggtgttc 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |||    
T  1920317 actctcgtaatagaaaaaagatatagttttacactaacatccaatagaaataaa-tatttgatagctatacttaaaaagagggttacaaaataggtcttc 1920415  T
Q  329 atgtaaagacggtaagtttctattgaacgcccgttaaatgatgttgtaaaatatttataccgtcaatgtatcgatattaaactcgtctcctaatatcctg 428  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||     
T  1920416 atgtaaagaaggtaagtttctattgaacgtccgttaaacgatgttgtaaaatatttatactgtcaatatatcgatattaaactcttctcctaatatcctt 1920515  T
Q  429 cgtcaatgtaatcaaacaattgaaatgagattagtgaaatgagattaattcaaacacggggtcacttgccctcttttgtctccatcatctggaaattcct 528  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  1920516 cgtcaatgtaaccaaacaattgaaatgagattagtgaaatgagattaattcaaacacggggccacttgccctctttcgtctccaccatctggaaattcct 1920615  T
Q  529 cttcttcatctccattaaaattaaacatagccactatatctttatcctccctcttcggagaagaacaaatctactgattgaagaccgacgactcgaagtc 628  Q
    ||||||| |||||||||||||||||  | ||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1920616 cttcttcctctccattaaaattaaatgtggccactacatcctcatcctccctcttcggagaagaacgaatctactgattgaagaccgacgactcgaagtc 1920715  T
Q  629 atccacacacctctaagagagtttgtggatctcagatcctaacatattgcaattaagcaacttaacaaacaacatgtatttgga---cttcnnnnnnnna 725  Q
    |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||        |    
T  1920716 atc--cacacctctaagagagattgtggatctcagatcctaacatattgcaattaagcaacttaacaaacaacatgtatttggacttcttctttttttta 1920813  T
Q  726 ttggtgggttttgttaatttttaatatttgttgaaa 761  Q
    ||||||||||||||||||||||||||||||||||||    
T  1920814 ttggtgggttttgttaatttttaatatttgttgaaa 1920849  T

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