View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_10 (Length: 423)
Name: NF14504_high_10
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 4388258 - 4387972
Alignment:
| Q |
17 |
acaattctttgctaagctttacttaactttcggtagaacttcttaattactaggagcccccttcccctaggaaccggaagcttaacacacnnnnnnnnnt |
116 |
Q |
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| T |
4388258 |
acaattctttgctaagctttacttaactttcggtagaacttcctaattactaggagcccccttcccctaggaaccggaagcttaacaca--aaaaaaaat |
4388161 |
T |
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| Q |
117 |
taaaattcttccgcccaccaaacacttctttgtgttttatgggtgcctcttttgttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctct |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388160 |
taaaattcttccgcccaccaaacacttctttgtgtgttatgggtgcctcttt-gttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctct |
4388062 |
T |
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| Q |
217 |
gccttcctttgtgactccaatcaaacaatttgttgaatcatggagaaagcaaaacatagtaagccgaggaacaagttctttacagaagca |
306 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388061 |
gccttcctttgtgactccaatcaaacaatttgtttaatcatggagaaagcaaaacatagtaagccgaggaacaagttctttacagaagca |
4387972 |
T |
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