View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_13 (Length: 407)
Name: NF14504_high_13
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 45734892 - 45735276
Alignment:
| Q |
7 |
aagaaaaaagaagaaagcttaatttcggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagt |
106 |
Q |
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| T |
45734892 |
aagaaaaaagaagaaagcttaattttggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatgtgtccaatctgaaggcagt |
45734991 |
T |
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| Q |
107 |
actgattcttttgcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgnnnnnnnttatattgnnnnnnncttt |
206 |
Q |
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| T |
45734992 |
actgattcttttgcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgaaaaaaattatattgtttttttcttt |
45735091 |
T |
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| Q |
207 |
ggannnnnnnaaatatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattatttta |
306 |
Q |
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| T |
45735092 |
gga-ggggggaaatatattattaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattatttta |
45735190 |
T |
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| Q |
307 |
cactaacgtctatcaaaatgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatt |
392 |
Q |
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| T |
45735191 |
cactgacgtctatcaaaatgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatt |
45735276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 45746179 - 45746313
Alignment:
| Q |
34 |
gcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagtactgattcttttgcttttcctgtgtaa |
133 |
Q |
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| T |
45746179 |
gcaggttgagggaattgaagactatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaa |
45746278 |
T |
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| Q |
134 |
gtcaatcttatattatcaatcaatcctaatcgtca |
168 |
Q |
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| T |
45746279 |
gtcaatcttatattatcaatcaatcataatcgtca |
45746313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 220 - 390
Target Start/End: Original strand, 45746367 - 45746537
Alignment:
| Q |
220 |
tatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgat-gtattattttacactaacgtcta |
318 |
Q |
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| T |
45746367 |
tatattgttaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgtgatttgttgatggtgttattttacactaacgtgta |
45746466 |
T |
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| Q |
319 |
tcaaaatgaaactcatatataataatgggccatgtgc-aaacatatatagaactttgttgttgcatgttgtca |
390 |
Q |
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| T |
45746467 |
tctaaattaaactc--atataataatcgtctatgtgcaaaacatatatagaactttgctgttacatgttgtca |
45746537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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