View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_high_22 (Length: 357)
Name: NF14504_high_22
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 339
Target Start/End: Complemental strand, 2122493 - 2122155
Alignment:
| Q |
2 |
acggagtgtctatgttatttatgttgatttcctnnnnnnnn-cagttattcaatgatgggatgctgagacatattctacttcaactatgaagaactgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2122493 |
acggagtgtctatgttatttatgttgatttccttaaaaaaaacagttattcgatgatgggatgctgagacatattctacttcaactatgaagaactgatt |
2122394 |
T |
|
| Q |
101 |
attaaggtactatataacaagatatcatcaaagaataaaataatgaaattccttagaaaaggtttgaacatggtgttcatagttacttgaaatgtagaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2122393 |
attaaggtactatataacaagatatcatcaaagaataaaataatgaaattccttagaaaaggtttgaacatggtgttcatagttacttgaaatgaagaag |
2122294 |
T |
|
| Q |
201 |
gtgtgttgcaaagccaaaagatactaacctaacattcatagtgaccttggtgggtgcgagaaaaagacttgttaataccgttcatgcatcatgatttgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
2122293 |
gtgtgttgcaaagccaaaagatactaacctaacattcatagtgaccttggtgggtgcgagaaaaagacttgttaataccgttcatacatcatgatctgat |
2122194 |
T |
|
| Q |
301 |
gatacctttgaatcaaatcgagtttctagaacaatgtag |
339 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2122193 |
gataccgttgaatcaaatcgagtttctagaacaatgtag |
2122155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University