View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_23 (Length: 348)
Name: NF14504_high_23
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 54985975 - 54985656
Alignment:
| Q |
20 |
atacagattcagcatccaatatcacctcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaat-----aagtgaatgtagtc |
114 |
Q |
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| T |
54985975 |
atacagattcagcatcctatatcaactcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaattaaataagtgaatgtagtc |
54985876 |
T |
|
| Q |
115 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
214 |
Q |
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| T |
54985875 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
54985776 |
T |
|
| Q |
215 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
314 |
Q |
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| T |
54985775 |
caagcaagaattttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
54985676 |
T |
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| Q |
315 |
aacatgcccaattgtatgtg |
334 |
Q |
| |
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|||||||||||||||||||| |
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| T |
54985675 |
aacatgcccaattgtatgtg |
54985656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 334
Target Start/End: Complemental strand, 7883437 - 7883219
Alignment:
| Q |
116 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
215 |
Q |
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| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
216 |
aagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgca |
315 |
Q |
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|||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||| |
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| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagca |
7883238 |
T |
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| Q |
316 |
acatgcccaattgtatgtg |
334 |
Q |
| |
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|||||||||||||| |||| |
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| T |
7883237 |
acatgcccaattgtgtgtg |
7883219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 334
Target Start/End: Complemental strand, 18396224 - 18396005
Alignment:
| Q |
115 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
214 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| | || || || || ||| | | ||||| | ||||| |
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| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
215 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
314 |
Q |
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| | | ||||| || || |||||||| |||||||| || ||||| ||||| || |||||||| || || || |||||||||||||| || |||||||| |
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| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
|
| Q |
315 |
aacatgcccaattgtatgtg |
334 |
Q |
| |
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||||| |||||||| |||| |
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| T |
18396024 |
gacatgtccaattgtgtgtg |
18396005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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