View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14504_high_28 (Length: 314)

Name: NF14504_high_28
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14504_high_28
NF14504_high_28
[»] chr6 (1 HSPs)
chr6 (1-296)||(30737624-30737919)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 30737624 - 30737919
Alignment:
Q  1 ttcactcagatatcagattcctcctcttcagcatagagaaagactctatttaagtgtgtcaaatttgcatcaagaaataccttcttgataaatgcacaaa 100  Q
    |||||||| |||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  30737624 ttcactcatatatcagactcgtccacttcagcatagagaaagcctctatttaagtgtgtcaaatttacatcaagaaataccttcttgataaatgcagaaa 30737723  T
Q  101 cttgttgagattactacgtactcaatacaaaggaaaaatttccttttcaaaataaaaaaccctacaaaatttgtaggtactactccttccaatatggaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737724 cttgttgagattactacgtactcaatacaaaggaaaaatttcctcttcaaaataaaaaaccctacaaaatttgtaggtactactccttccaatatggaaa 30737823  T
Q  201 ctctggttacatttcgagcctgatcctctcttgttataataacctggataaaatgatctttgaaaatccacttcttcaattaacttcaatcccaca 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737824 ctctggttacatttcgagcctgatcctctcttgttataataacctggataaaatgatctttgaaaatccacttcttcaattaacttcaatcccaca 30737919  T

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