View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_3 (Length: 522)
Name: NF14504_high_3
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_3 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0169 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 60 - 522
Target Start/End: Complemental strand, 19286622 - 19286161
Alignment:
| Q |
60 |
gaattattctaaatatgttgtttgcaatgtatgtaatgtttgtaccttttgtagccaaggctatagaattggactttgctacaattatgcactatgttgt |
159 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
19286622 |
gaatcattctaaacatgttgttcgcaatgtatgtaatgtttgtaccttttgtagccaaggctatataattgaacttagctacaattatgcactatgttgt |
19286523 |
T |
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| Q |
160 |
acttgtacttgtagaagaggacctagaataacagtccatcattcttccttcgttctgatgccacagtaagggggcggttttcactgtcacgcatgtaggt |
259 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| || |
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| T |
19286522 |
acttgtacttgtagaagaggacctagaataacaatccatcattcttcctttgttccgatgccacagtaagggggcggttttcactgtcacgcctgtatgt |
19286423 |
T |
|
| Q |
260 |
gtttttggtttgtttctgtgtttggtgcctgttgttgcttaagagccttttagtgctcttttagtttttggttcagctggttttttagctttctatgtat |
359 |
Q |
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| T |
19286422 |
gtttttgttctgtttttgtgtttggtgcctgctgttgcttaagag-cttttagtgctcttttagtttttggttcagctggttttttagctttctatgtat |
19286324 |
T |
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| Q |
360 |
ttctccttgcccctgttggtacttcttgtgcccaggacgtgttataatatatgctgaattcaagaaaattgcacnnnnnnncgatgtttgttttttatgc |
459 |
Q |
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| ||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19286323 |
tgctccttgcctctgtttgtacttcttgtgctcaggacatgttataatatatgctgaattcaagaaaattgcacaaaaaaatgatgtttgttttttatgc |
19286224 |
T |
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| Q |
460 |
agggttttgatggtgcattgaagttgtactgggtattacagctgatggatctgttgtgatctc |
522 |
Q |
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| T |
19286223 |
agggttttgatgatgcattgaagttgtactggctattacaggtgatggatctgttgtgatctc |
19286161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 19288054 - 19288015
Alignment:
| Q |
17 |
catcagtaacaacaagaaaaaaccctcaataatgttactgac |
58 |
Q |
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| T |
19288054 |
catcagtaacaacaa--aaaaaccctcaataatgttactgac |
19288015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 301 - 521
Target Start/End: Original strand, 27801 - 28018
Alignment:
| Q |
301 |
agagccttttagtgctctttt-agtttttggttcagctggttttttagctttctatgtatttctccttgcccctgttggtacttcttgtgcccaggacgt |
399 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
27801 |
agagccttttagtgctctttttagtttttggttcagctggttttttaactttctat----tgctccttgcccctgttggtacttcttgtgcctaggacgt |
27896 |
T |
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| Q |
400 |
gttataatatatgctgaattcaagaaaattgcacnnnnnnncgatgtttgttttttatgcagggttttgatggtgcattgaagttgtactgggtattaca |
499 |
Q |
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| T |
27897 |
gttataatatatgccgaattcaagaaaattgcacaaaaaaatgatgtttgttttttatgcagggttttaatcgtgcattgaagttgtactgggtattgaa |
27996 |
T |
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| Q |
500 |
gctgatggatctgttgtgatct |
521 |
Q |
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| T |
27997 |
ggtgatggatctgttgtgatct |
28018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 27567 - 27607
Alignment:
| Q |
17 |
catcagtaacaacaagaaaaaaccctcaataatgttactgac |
58 |
Q |
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| T |
27567 |
catcagtaacaacaa-aaaaaaccctcaataatgttactgac |
27607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 33569196 - 33569277
Alignment:
| Q |
442 |
gatgtttgttttttatgcagggttttgatggtgcattgaagttgtact-gggtattacagctgatggatctgttgtgatctc |
522 |
Q |
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| T |
33569196 |
gatgtttgttttttatgcagggttctgatggtggattgaagttgtattggggtattgcagctgatggatctgttgtgatctc |
33569277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 34241806 - 34241872
Alignment:
| Q |
101 |
gtaccttttgtagccaaggctatagaattggactttgctacaattatgcactatgttgtacttgtac |
167 |
Q |
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| T |
34241806 |
gtaccttttgtagccaaggctatagaactggacttggctacaattatgcactgtgttgtacttgtac |
34241872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 40929063 - 40929115
Alignment:
| Q |
171 |
tagaagaggacctagaataacagtccatcattcttccttcgttctgatgccac |
223 |
Q |
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| T |
40929063 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccac |
40929115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 5946362 - 5946443
Alignment:
| Q |
442 |
gatgtttgttttttatgcagggttttgatggtgcattgaagttgtact-gggtattacagctgatggatctgttgtgatctc |
522 |
Q |
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| T |
5946362 |
gatgtttgttttttatgcagggttctgatggtggattgaagttgtactaaggtattgcaggcgatggatctgttgtgatctc |
5946443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 19026031 - 19026112
Alignment:
| Q |
442 |
gatgtttgttttttatgcagggttttgatggtgcattgaagttgtact-gggtattacagctgatggatctgttgtgatctc |
522 |
Q |
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|||||||||||||||||||||||| ||| ||| ||||||| |||||| ||||||| || |||||||||||||||||||| |
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| T |
19026031 |
gatgtttgttttttatgcagggttctgacagtggattgaagctgtactagggtattgtaggcgatggatctgttgtgatctc |
19026112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 48504702 - 48504650
Alignment:
| Q |
171 |
tagaagaggacctagaataacagtccatcattcttccttcgttctgatgccac |
223 |
Q |
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|||||||||||||| | | ||| |||||||||| ||||| ||||||||||||| |
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| T |
48504702 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccac |
48504650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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