View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_30 (Length: 308)
Name: NF14504_high_30
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 40513161 - 40513466
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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| T |
40513161 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40513260 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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| T |
40513261 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40513360 |
T |
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| Q |
203 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataagctgtacgaaacttcata |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513361 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataagctgtacgaaacttcata |
40513460 |
T |
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| Q |
303 |
caaatc |
308 |
Q |
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|||||| |
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| T |
40513461 |
caaatc |
40513466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 40482487 - 40482768
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
40482487 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40482586 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40482587 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40482686 |
T |
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| Q |
203 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
284 |
Q |
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| T |
40482687 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
40482768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 21611865 - 21611803
Alignment:
| Q |
239 |
aacaagttctcctctaccaaaaaccttggaagaaggagcaacataagctgtacgaaacttcat |
301 |
Q |
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||||||||||||||| ||||||||| | |||||||| |||||||| || ||| ||||| |||| |
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| T |
21611865 |
aacaagttctcctctcccaaaaaccctagaagaaggtgcaacatatgccgtatgaaacctcat |
21611803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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