View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_38 (Length: 276)
Name: NF14504_high_38
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 52577927 - 52577680
Alignment:
| Q |
18 |
agatgaagcaaagggttggttagacaccacatacttatcgcattcaggaaaccttcgcatctcaagagggaataaggtgattaggcatttccaatataaa |
117 |
Q |
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| T |
52577927 |
agatgaagcaaagggttggttagacaccacatacttatcgcattcaggaaaccttcgcatctcaagagggaataaggtgattaggcatttccaatataaa |
52577828 |
T |
|
| Q |
118 |
catcatcttaatatatagtcttttgttcctcccctcaattaaaatgcttgttcgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577827 |
catcatcttaatatatagtcttttgttcctcccctcaattaaaatgctagttcgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaa |
52577728 |
T |
|
| Q |
218 |
gacttaacagcaacatatatatagtgcagggaaccacatctgtgctgc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52577727 |
gacttaacagcaacatatatatagtgcagggaaccacatttgtgctgc |
52577680 |
T |
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