View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14504_high_41 (Length: 263)
Name: NF14504_high_41
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 2372494 - 2372241
Alignment:
| Q |
1 |
ccaccaccattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372494 |
ccaccaccattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgattg |
2372395 |
T |
|
| Q |
101 |
tttctggttcaccaggtggtgttcttgttggtgtcttaggaacaacttttgttaacttttcttcaatcatattagaccaagtttttgcctcaatcaaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2372394 |
tttctggttcaccaggtggtgttcttgttggtgtcttaggaacaacttttgttaacttttcttcaatcatgttagaccaagtttttgcctcaatcaaccc |
2372295 |
T |
|
| Q |
201 |
cattgaaaattctttcactttctcatcactttccaatgcttcttccttcatctc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2372294 |
cattgaaaattctttcactttctcatcactttccaatgcttcttccttcttctc |
2372241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 3376967 - 3376877
Alignment:
| Q |
8 |
cattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgat |
98 |
Q |
| |
|
|||| ||||||||||| || ||| | || ||||| || ||| |||||||||| |||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
3376967 |
cattaacatcaaaagagaaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgat |
3376877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University