View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14504_high_49 (Length: 238)
Name: NF14504_high_49
Description: NF14504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14504_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 46356568 - 46356391
Alignment:
| Q |
1 |
ttggagctaatttgctgttagcattcataatcatcataaacagttcattgtttatcttctgatgattgaacttcaaatactgcaggctatgatggtcaga |
100 |
Q |
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| T |
46356568 |
ttggagctaatttgctgttagcattcataatcatcataaacagttcattgtttatcttctgatgattgaacttcaaatactgcaggctatgatggtcaga |
46356469 |
T |
|
| Q |
101 |
ggttttaaaggagatgttaacatacaaaagtgataattagtgtcagaatcatcttttgggacgacatatagtatatgt |
178 |
Q |
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| T |
46356468 |
ggttttaaaggagatgttaacatacaaaagtgataattagtgtcagaatcatcttttgggacgacatatattatatgt |
46356391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7177052 - 7176832
Alignment:
| Q |
1 |
ttggagctaatttgctgttagcattcataatcatcataaacagttcattgtttatcttctgatgattgaacttcaaatactgcaggctatgatggtcaga |
100 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||| ||| ||| ||||||||||||||||||| | |||| |
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| T |
7177052 |
ttggagctaatttgctgttggcattcataatcatcacaaacagctcatagtttatcttctgacaatttaacacaaaatactgcaggctatgatagccaga |
7176953 |
T |
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| Q |
101 |
ggttttaaaggagatgttaacatacaaaagtgataattagtgtcagaatcatcttttgggacgacatatagtatatgtttgttaaacttaacagttgcca |
200 |
Q |
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||||||||||| || || ||| || || || || ||||||||||||||||||||| | || ||| | |||||||||| ||||||||||||| || |
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| T |
7176952 |
ggttttaaaggggacgtcgacaatcacaaaatttatttcttgtcagaatcatcttttgggatggcagatattgtatgtttgttgaacttaacagttgtca |
7176853 |
T |
|
| Q |
201 |
taggagcttctctcctgtctg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7176852 |
taggagcttctctcctgtctg |
7176832 |
T |
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